BtaEX6017975 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015647 | CYP4X1
Description
cytochrome P450, family 4, subfamily X, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20244]
Coordinates
chr3:99675596-99687618:-
Coord C1 exon
chr3:99687491-99687618
Coord A exon
chr3:99687251-99687405
Coord C2 exon
chr3:99675596-99675702
Length
155 bp
Sequences
Splice sites
3' ss Seq
ATCTCCACTCCCTCTTCTAGCTC
3' ss Score
9.1
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
AATAAGTGGGAGAAGATTTGTGGCTCTCAGAATACACTTCTGGATATCTATGAGCACATCAACTTGATGACCCTGGACGTACTCATGAAATGTATTTTCAGCTGGGAAACCAACTGCCAAACAGACAG
Seq A exon
CTCCCATGATAATTATGTAAAAGCAACAAGTGAAGGCAGCAATATCCTTATGCAACGCCTGTTCAATTACTTTTATCACTATGACCTAATTTTCAAATTAAGTCCTCTGGGCCACCGCCTGCGGGAGGTAAACAAGATATTGCATCATCATACAG
Seq C2 exon
ACAAGATAGTCAAGAATAGAAGGAATTCCCTCAAGGATGAGAATAAGCAGACTAACACTCAGAAGAGGAAATACCGGGACTTCCTGGATATTGTCCTTTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015647-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.333
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.6=100)
A:
PF0006717=p450=FE(11.9=100)
C2:
PF0006717=p450=FE(8.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGAGAAGATTTGTGGCT
R:
ACAATATCCAGGAAGTCCCGGT
Band lengths:
218-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]