HsaEX0018338 @ hg38
Exon Skipping
Gene
ENSG00000186377 | CYP4X1
Description
cytochrome P450 family 4 subfamily X member 1 [Source:HGNC Symbol;Acc:HGNC:20244]
Coordinates
chr1:47035806-47038766:+
Coord C1 exon
chr1:47035806-47035933
Coord A exon
chr1:47036017-47036171
Coord C2 exon
chr1:47038660-47038766
Length
155 bp
Sequences
Splice sites
3' ss Seq
ATCCCAACTTTCTCTTCTAGCAC
3' ss Score
8.99
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GATAAGTGGGAGAAGATTTGCAGCACTCAGGACACAAGCGTGGAGGTCTATGAGCACATCAACTCGATGTCTCTGGATATAATCATGAAATGCGCTTTCAGCAAGGAGACCAACTGCCAGACAAACAG
Seq A exon
CACCCATGATCCTTATGCAAAAGCCATATTTGAACTCAGCAAAATCATATTTCACCGCTTGTACAGTTTGTTGTATCACAGTGACATAATTTTCAAACTCAGCCCTCAGGGCTACCGCTTCCAGAAGTTAAGCCGAGTGTTGAATCAGTACACAG
Seq C2 exon
ATACAATAATCCAGGAAAGAAAGAAATCCCTCCAGGCTGGGGTAAAGCAGGATAACACTCCGAAGAGGAAGTACCAGGATTTTCTGGATATTGTCCTTTCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186377-'6-7,'6-5,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.2=100)
A:
PF0006717=p450=FE(11.4=100)
C2:
PF0006717=p450=FE(7.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGAGAAGATTTGCAGCA
R:
CCAGAAAATCCTGGTACTTCCTCT
Band lengths:
211-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development