GgaEX0028939 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNP0]
Coordinates
chr8:20787283-20788871:+
Coord C1 exon
chr8:20787283-20787395
Coord A exon
chr8:20787490-20787641
Coord C2 exon
chr8:20788681-20788871
Length
152 bp
Sequences
Splice sites
3' ss Seq
CTGACCTCGACCTCTTACAGCAA
3' ss Score
6.97
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GATAAATGGGAGAAGAAGAAGTCAGTAGAGCTCTTCGAAGACGTCAGCCTGATGGCGCTGGACAGCATCATGAAATGCGCCTTCAGCTACAACGCCAACTGCCAGACTCAGAG
Seq A exon
CAACTCAGACACTTACATCAAAGCCGTTTTCGACCTGGGCTACCTCATAAACAAGAGAATACAGAATTTCTCCTACCAAGATGCCTTCTATGACCTGACTCACAGCAGCCGGGAGTTTCAGGATGCCTGCAGGCGGGCCCATGCCCACACAG
Seq C2 exon
GATGAGAATGGAGTTGGCCTGTCTGATGAGGACCTGCGTGCTGAGGTGGACACATTCATGTTTGAGGGGCACGACACCACAGCCAGCGGGATCTCATGGCTCCTGTACTGCATGGCATTGCACCCCAAGCACCAGGCACTGTGCAGGGAGGAGATCCAGGGGATCATGGGGAACCGGGATACCATTGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010469_MULTIEX1-3/5=2-5
Average complexity
C2
Mappability confidence:
75%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.4=100)
A:
PF0006717=p450=FE(11.3=100)
C2:
PF0006717=p450=FE(13.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCGAAGACGTCAGCCTGA
R:
GTTCCCCATGATCCCCTGGAT
Band lengths:
256-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]