RnoEX0025978 @ rn6
Exon Skipping
Gene
ENSRNOG00000009597 | Cyp4a1
Description
cytochrome P450, family 4, subfamily a, polypeptide 1 [Source:RGD Symbol;Acc:68945]
Coordinates
chr5:134498806-134500034:+
Coord C1 exon
chr5:134498806-134498930
Coord A exon
chr5:134499358-134499512
Coord C2 exon
chr5:134499928-134500034
Length
155 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTTCTTCTTCTTCAGAAA
3' ss Score
10.84
5' ss Seq
CAGGTTCTG
5' ss Score
2.14
Exon sequences
Seq C1 exon
GACAAATGGGAACAGCTGGCAGGTCAAGACTCCTCTATAGAAATCTTTCAACATATCTCCTTAATGACCCTAGACACTGTCATGAAGTGTGCCTTCAGCCACAATGGCAGTGTTCAGGTGGATGG
Seq A exon
AAATTACAAGAGCTATATCCAGGCCATTGGGAACTTGAATGACCTCTTTCACTCCCGTGTGAGGAACATCTTTCATCAGAATGATACCATCTATAATTTTTCTTCCAATGGCCACTTGTTCAACCGTGCTTGTCAACTTGCCCATGATCACACAG
Seq C2 exon
ATGGTGTGATCAAGCTAAGGAAGGATCAGCTGCAGAATGCGGGAGAGCTGGAAAAGGTCAAGAAGAAAAGACGTTTGGATTTTCTGGACATCCTCTTACTTGCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009597_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.2=100)
A:
PF0006717=p450=FE(11.5=100)
C2:
PF0006717=p450=FE(7.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAACAGCTGGCAGGT
R:
TCTGGCAAGTAAGAGGATGTCCA
Band lengths:
226-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]