RnoEX0025977 @ rn6
Exon Skipping
Gene
ENSRNOG00000009597 | Cyp4a1
Description
cytochrome P450, family 4, subfamily a, polypeptide 1 [Source:RGD Symbol;Acc:68945]
Coordinates
chr5:134495469-134500034:+
Coord C1 exon
chr5:134495469-134495596
Coord A exon
chr5:134498806-134498930
Coord C2 exon
chr5:134499928-134500034
Length
125 bp
Sequences
Splice sites
3' ss Seq
ATGTTCCCCTCCCACTACAGGAC
3' ss Score
10.53
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GATATGGTTTGCTCTTGCTGAATGGACAACCGTGGTTCCAGCACCGGCGAATGCTAACCCCAGCCTTCCACTATGACATTCTGAAACCCTATGTAAAAAACATGGCTGACTCCATTCGACTGATGCTA
Seq A exon
GACAAATGGGAACAGCTGGCAGGTCAAGACTCCTCTATAGAAATCTTTCAACATATCTCCTTAATGACCCTAGACACTGTCATGAAGTGTGCCTTCAGCCACAATGGCAGTGTTCAGGTGGATGG
Seq C2 exon
ATGGTGTGATCAAGCTAAGGAAGGATCAGCTGCAGAATGCGGGAGAGCTGGAAAAGGTCAAGAAGAAAAGACGTTTGGATTTTCTGGACATCCTCTTACTTGCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009597_MULTIEX1-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.4=100)
A:
PF0006717=p450=FE(10.2=100)
C2:
PF0006717=p450=FE(7.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGGTTTGCTCTTGCTGAATGG
R:
TCTGGCAAGTAAGAGGATGTCCA
Band lengths:
234-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]