HsaALTA1052137-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000187626 | ZKSCAN4
Description
zinc finger with KRAB and SCAN domains 4 [Source:HGNC Symbol;Acc:HGNC:13854]
Coordinates
chr6:28245875-28247092:-
Coord C1 exon
chr6:28246969-28247092
Coord A exon
NA
Coord C2 exon
chr6:28245875-28245975
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
CCGGCCATTTGTTGTTTCAGGTG
3' ss Score
9.58
Exon sequences
Seq C1 exon
GGTTTGCTGAAAATGGAAGATGTGGCCCTGACCCTCACTCCTGGGTGGACACAGCTGGATTCATCTCAGGTGAACCTCTACAGAGATGAAAAGCAGGAGAACCATAGCAGCCTGGTCTCCCTTG
Seq A exon
NA
Seq C2 exon
GTGGTGAAATACAGACTAAGAGCAGGGACTTGCCTCCAGTCAAGAAGCTTCCAGAAAAGGAGCATGGGAAGATATGCCACCTGAGGGAAGACATTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187626-9-8,9-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.405 A=NA C2=0.353
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.2)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=9.1),PF134651=zf-H2C2_2=WD(100=9.1),PF134651=zf-H2C2_2=WD(100=9.1),PF134651=zf-H2C2_2=WD(100=9.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACCATAGCAGCCTGGTCT
R:
CAATGTCTTCCCTCAGGTGGC
Band lengths:
123-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains