HsaALTA1052399-1/2 @ hg38

Alternative 3'ss

Gene

ENSG00000188321 | ZNF559

Description

zinc finger protein 559 [Source:HGNC Symbol;Acc:HGNC:28197]

Coordinates

chr19:9341102-9342084:+

Coord C1 exon

chr19:9341102-9341184

Coord A exon

NA

Coord C2 exon

chr19:9341695-9342084

Length

0 bp

Sequences

Splice sites

5' ss Seq

ATGGTAAGA

5' ss Score

9.48

3' ss Seq

TCATTAATTTTCACCAACAGGAG

3' ss Score

9.68

Exon sequences

Seq C1 exon

ATTGGGAGAGTCATATTAATACCAAATGGTCAGCACCTCAGCAGAATTTTTTGCAGGGGAAAACATCCAGTGTGGTGGAAATG

Seq A exon

NA

Seq C2 exon

GAGAGAAACCATTTTGGAGAGGAACTGTTTGACTTTAACCAATGTGAAAAAGCCTTGAGTGAACACTCATGCCTTAAGACTCACAGGAGAACTTACTTTAGAAAGAAAACCTGTGAGTGTAATCAATGTGAAAAAGCCTTCAGAAAACCCTCTATCTTTACTTTACACAAGAAAACTGATATCGGAGAGGAACTTCCTAACTGTAATCAATGTGAAACAGCCTTCAGCCAACATCTACATCTTGTTTGCAAGAAAACTAGCCAAAATCTACATCTTGTTTGCAAGAAAACTCACACTCAAGAGAAACCATATAAATGCAGTGACTGTGAAAAAGGCTTACCTTCCTCCTCACACCTCAGAGAATGTGTAAGAATTTATGGTGGAGAGAGA

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000188321-12-12,12-11-1/2

Average complexity

Alt3

Mappability confidence:

NA

Protein Impact

Protein isoform when splice site is used (No Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.020 A=NA C2=0.013

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NA

C2:

PF134651=zf-H2C2_2=WD(100=5.2),PF0009621=zf-C2H2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7)

Main Inclusion Isoform:

ENSP00000468153