HsaINT0187647 @ hg38
Intron Retention
Gene
ENSG00000188321 | ZNF559
Description
zinc finger protein 559 [Source:HGNC Symbol;Acc:HGNC:28197]
Coordinates
chr19:9341102-9343843:+
Coord C1 exon
chr19:9341102-9341184
Coord A exon
chr19:9341185-9341616
Coord C2 exon
chr19:9341617-9343843
Length
432 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
TTATTTTCCATGTGTAACAGAAT
3' ss Score
7.12
Exon sequences
Seq C1 exon
ATTGGGAGAGTCATATTAATACCAAATGGTCAGCACCTCAGCAGAATTTTTTGCAGGGGAAAACATCCAGTGTGGTGGAAATG
Seq A exon
GTAAGATTCAGAAGGTATAATTTATTGTCTTCCATGTTAGAGGAAGATTGGAAATTCCTTAAAATGGAAAAGCAGCACAATAACCTTGAGACATTTGAGACTAGTGTTTTTCACCCAAAAATAATCTGTCTCTTGGAGAGACTATGGATCATGAGTTTGACAAACACTCTAAACATCCCTCAGAATATATTTGTTTACATATTTCCTTCAACATTCCCATATGTATCTCAGATGTTTTTGATAAATAATTCACTCTTGGGCCGTTATCAGCTAAGCTCTATTTAGAAGCCCTCTGAAAGTAAAGAATATAACAGAACTTCCTGCAGTCACTTTGTTCCACTTGAAAACACTCAGGTCTGAACCATGCCTTGCAATGAAAATGGCAGGAACAAACAGTTTCAATTATACTAACTTATTTTCCATGTGTAACAG
Seq C2 exon
AATTCAGAGTAAAAGGGAGAATCTCAATGAAATAAATTTGGAAAACTTCTATGAACCATCATTAATTTTCACCAACAGGAGAGAAACCATTTTGGAGAGGAACTGTTTGACTTTAACCAATGTGAAAAAGCCTTGAGTGAACACTCATGCCTTAAGACTCACAGGAGAACTTACTTTAGAAAGAAAACCTGTGAGTGTAATCAATGTGAAAAAGCCTTCAGAAAACCCTCTATCTTTACTTTACACAAGAAAACTGATATCGGAGAGGAACTTCCTAACTGTAATCAATGTGAAACAGCCTTCAGCCAACATCTACATCTTGTTTGCAAGAAAACTAGCCAAAATCTACATCTTGTTTGCAAGAAAACTCACACTCAAGAGAAACCATATAAATGCAGTGACTGTGAAAAAGGCTTACCTTCCTCCTCACACCTCAGAGAATGTGTAAGAATTTATGGTGGAGAGAGACCATATACTCATAAGGAGTATGTCGAAACCTTTTCTCATTCTACAGCCCTTTTTGTACACATGCAAACTCAAGATGGAGAAAAATTCTATGAATGTAAAGCATGTGGGAAACCCTTCACTGAGTCGTCATATCTTACTCAACATTTAAGAACTCATAGTAGAGTGTTACCTATAGAACATAAGAAATTTGGCAAAGCCTTTGCTTTTTCCCCAGATCTTGCTAAACATATAAGACTTAGAACTAGAGGAAAACACTATGTTTGTAATGAATGTGGCAAAGAATTTACTTGTTTCTCAAAACTCAACATTCACATAAGGGTTCACACTGGAGAAAAACCGTATGAGTGCAACAAATGTGGGAAAGCCTTCACTGATTCATCAGGTCTTATAAAACACAGGCGAACTCACACTGGAGAAAAGCCTTATGAATGTAAGGAATGTGGGAAAGCTTTTGCTAACTCTTCACATCTTACTGTACATATGAGAACTCACACTGGTGAGAAGCCTTATCAATGTAAGGAATGTGGAAAAGCCTTTATTAATTCCTCTTCCTTTAAAAGTCACATGCAGACTCATCCTGGTGTAAAACCCTATGACTGTCAACAGTGTGGGAAAGCCTTCATTCGATCCTCATTTCTTATTCGACATTTGAGAAGTCACAGTGCAGAAAGGCCTTTTGAATGTGAGGAATGTGGGAAAGCCTTTAGATACTCCTCGCACCTTAGTCAACATAAAAGAATACATACAGGGGAGAGGCCATATAAATGTCAAAAGTGTGGGCAAGCCTTCAGTATCTCATCAGGCCTTACAGTACACATGAGAACTCACACTGGTGAACGGCCCTTTGAATGTCAGGAATGTGGGAAAGCCTTTACTCGGTCCACATATCTTATTCGACATCTAAGAAGTCATAGTGTGGAGAAACCATATAAGGAATGTGGGCAAACCTTTAGTAATTCCTCATGCCTTACTGAATGTGTGTGAATTGGGGCTGATACTTGGAAAGAATGTGGTAAAGCCACTACTTCCTCACACTTACTGAACATGTACTCATTCATAGTGGCAATGTACACAGTCATAAGGAATGTGGGAAGCCTTCCTTGGTGTCTCAGATCTTAACAATTCCAATAGAAGAGAAGACATATGAATGTAAGGAATGTGGGAAAATCTTGGCTCCTTCCATAGGCCTTACTATTCATGTGTCTGTGCATCCTAGGAAACAAACTGAACGTAGGAAACCTGTCGATGCTTACATCTTACTGAGTCTGTTTGAACTCATGCTGGAGAGAAATGCTATGAATGTGAGGAAGGTGGAAAAGCTTTCATTATTTTCCTCGGGCCTTACTGAGCTTGTGAGCACATTGGATATAAATGCACGTCCTCTGGCTGTAAGGAATGTGTTGAAACCTTTCACTCTGCCTTATACCTTAATATTCAGCTGTGATCTCACAAGTGTGAAAAATCTTATGAATGTAAAATGTGTGGAGATTCTTCTTTGTTTTTAGCTTCCACTTTGGGAACATGTCAAAGCACACATTGAGAAGTCCCATGAGTGAAAGAGATGTTGGAAAGCCCTTGAACTTGGTCGTTAGGAAACATCCACACTGAAGAGGAACCTGACTGTATGGAAGGTCAAAAAGGCTGTATTAATTTACATGCAAAAAGTCACACTAGAGGAATGCCATATCAGAATGCTTTTGGTAAATATACATGTTTTAAAGAGGTTATATATCATTAATAAAAATATCTAGCTGGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188321:ENST00000317221:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAGCACCTCAGCAGAATT
R:
AGGCTGTTTCACATTGATTACAGT
Band lengths:
357-789
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains