MmuINT0005454 @ mm10
Intron Retention
Gene
ENSMUSG00000060510 | Zfp266
Description
zinc finger protein 266 [Source:MGI Symbol;Acc:MGI:1924769]
Coordinates
chr9:20495068-20500953:-
Coord C1 exon
chr9:20500874-20500953
Coord A exon
chr9:20500478-20500873
Coord C2 exon
chr9:20495068-20500477
Length
396 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
ATAAAACTTTTTGTTCTCAGGTG
3' ss Score
8.38
Exon sequences
Seq C1 exon
AATTGGAACTACAACCTACAATTGACGATTCAGAGCTTGAGAATTATTTTAGGATGCAAAGTTCCAGTGCAACAGAAATG
Seq A exon
GTAAGATCAGCAAGGACTTTCTATTTCATACTCAAGAAGGGGGTCCTTTGTAGTACACCATACAAAAGAGAGATACTTGGGATGAATAGCATGCTCCTGAGAGGAATTGATGTTTCTGAAGAACTGTCTGGAATATAATGAATTGGGAGATTCCCCCAAATAGATCATAAAGATTTTTGTCTCATTGTTTCCACAAATATGTATTTCCATATATGCAATTTGATGTGGGAGTTTTAAGCAATTATAGAGAACCACTTTTTTTAGTGTATATAATTAGTCATCAAGATTTTGACAAAGGAATATGTCATTCAGTTTGGAAAAACTAAAGGTCAGGAAATAATTGCATGGAAAAGAAACCGTAAATTTCATTGTGAACATAAAACTTTTTGTTCTCAG
Seq C2 exon
GTGGGTGACTCATCTCTTCACGAGCAGTCAGGAAACCACAATGAAGAGGACCTATGTGACTCTAAGCCATGTGGGAATGTGTTGGGTGAACAATTATGCCTTAACACAGAGGTGAGCATGCAAAGTCAAGGATACAGTTCTGAGTGTAACTGGTATGGGAAAGACATTCTTTCTTTGCTCAAGGAAACCTCTACTGGACAGACCGTTTCTGAGCTTAATCAGTGTGGAAAACTCTTCAGTCTGACTCCAAACATCATGTACCCGAGCACTAGCACAAATGAGAAGCCCTTTGAATGCACAGACTGTGAGACAGCCTTTTTTAATCAGTCTTACTTTCAGCCAGATATGAGGCCTCACAATGGAGGAGAACCCTTTGACTGGAGTAAATACGGGAATGGTTTTATTCATCCTACAGGCCTTGCTATGCATCTTCCAATTCTCAATGCAAGAAACCCCTACAAATTTGAGGAATGTGGAAAGGACTTTCAGTATTTTGCATGCCTTAATAATCCCATGGGAATGTGCACTGGAGAAAAATTCTGTGACTGCAAGGAATGTTGGAAAGCCTTCACGGTTTCCTCACACCTAACTCAATATGTATCAATTCATACTGAAGAAAAATCCAAAGTATGTAAGATATGTGGGAAGTCCTTTGCTAACTATTCTCGACTTTCTGCACATGTAAAAACTCATAATGAAGAAAAGCCCTTTGTATGTAAGGAGTGTGGAAAGGCCTTTAAAAATATGTCATACCTTAATGATCACGTTAGAATTCACACTGGAATAAAATCATACAAATGTATGGAATGTGGGAAAGCCTTCCTTCGATGGTCAGGCCTTACTGAACACATAAGAGTTCACACTGGGGAAAAGCCTTACGAATGTAAGGAATGTGGAAAAACCTTTTCTAGATCTACTCAGCTTACTGAACACATAAGAACACACACTGGAATCAAACCTTATGAATGTAAGGAATGTGGGAAAGCCTTTACTCAGTACTCGGGCCTTGCCACCCATGTACGAATTCATAGTGGAGAAAAGCCCTTTGCTTGTAAGGAGTGTGGGAAGGCCTTTACCAGGACCTCTGGCCTGATTCATCATGTGAGAACTCACACAGGAGAGAAGCCTTTTGAATGTGTTCATTGTGGGAAAACCTTCATTACTTCCTCCCATCGCACTAAACATCTGAAAATTCACAGTGGCGAAAAGCCCTTTGTGTGTAACATATGTGGGAAAGCATTTATATATTCTACATCCCTTAACATTCACATGCGAACCCACACTGGAGAGAAGCCCTATATATGTAAGCAGTGTGGGAAAGCCTTCGCTGTTTACTCACGACTGAGGAAACACAGCAGAGTTCACACTGAGGAGAAGCCCTATCAATGTGAGGGTATGGCCGTTGCTATTTAGCCTATCTGTTGCCACCTTTAAATATTGACAGTGACACCAAAGATCATCAGATTAGTCTTAACTGCTTTGTGTGGGTTATAGAGGCTCACACTGGCCTTAGACACCATCCGAATTTTATGAAATAGGATATTTAGGTGCCCCCCCAACTTTTCTTCTTTTGGGTAGTGCTGAGGATTGACCTAGAACATCATGCAAGCTAGGCAAGCACTCAGTTACTGAGCTACCGTTTCCAGTTACCCTGGAACCTTTTCATGAATATCTGAGTCAGAGCATCTGTGGGTCATAAGTGAGGCCAGGACACTAAGTGGCTTCATTCTGATGCTTGACTCTTTGTAATCATAACATTTCTAAATGCTATGAAAACAGATTTGATCCTTTTTTTTGGTTAATGGCTGCCAGTGTGGCTTGTTAATGTGAAAATTCATCACAGGCCAAGATAATATAGGACACAGGTGGATTGTGGAAAGACACTCCTAGGCAACTACTCGGACCCCATTGGTTCTGATGAGCATACCAAGAAGTAGTTCCTACCTGTTCTTAATAGCTAGTCTACTTACAGATGTTAATCCTGTGGTCCTTTATAAAATTCAGATCGTCCATTCTGCCCCATCTTTTGAATCCATTTTGGATTGCAGTGACAGTAACTTTGTCCATATTCCTCAGGTTGGTTGAGATTGATGATCTGAGGATAGAACTGGGGGCCTCGTGGATGCTAGGCAAGTACTCTGTCACTAAGCTACATTCCTAGCTGGCCTAGTCTCTTAGCACAGATTTCTCAGTTATTGTAGTGTGGATAGGCTGAGAGTTTTTTTAAAGGTACAGTTCTCTTTGTTTAACAATTTCTTCTTAGCTTCAGTGTTCTCCCCTTTTCATATTTTACTAAAGGCACTCAGGAGGAACCAAGTTGCTCCTTTTGAACACTTTAATTACAGATAAGTTTCTGAGTCTATCACTCTCAAGTTCTAACTTCCACACAAAATGTTTCTATACAGATCTGCTCGGTTCAATATCACTACACACCACTGATTGCTTTTTCTTCATGTTCTAATAACATGTTCTTCCTTCTTAACTAAGGGAGTCCTCACCAGAATAGCTGGCCTCTACCTGTCACTCAGTTTCAAGGCTACTTGCATGTGTTTAAGTGTGTGGTTTTTTTTTGTTTTTTTTTTTTGTTTTTTTTTTTTTTACTGCATTGCCACAGTACCACAAAACACTAGAGCTGGCAAAATGGCTCAGAAGGTAAAGGTGCTTGTGAGCAGGAACTGAGTTTGATCCCAGGGACCCACACAGTCAAAGGAGAGCACGGACTGCTACACATTAGCCTCTACTTCTACATGCATACCACACTTGCACACACATGTATACACCATAAATATAACACAAAACAGCATAAACCAAGGTGCTTTAAAATTTCCCTTTAAAAGAAACAAAATTTTAGGTTAGCATAAGTATTGGGTTTTATTATGGCATTTTCATTTCTATAGATCGCTGTACTTCTCATTAGCTTACCACTTTTGGATAAAGGTTTAGGGCTGTGAGTTTTGCTCAGTGGTAATAGTCCTTACCTAGCATATGAATAGCTAGTTTTCATTTCCTGCAGTGGACAGACCATATATAGCAATTTATTTTCTCACACATGCAAGAATAACAGCATGGGAGCTAGTGAAATGGTTCAGAGGGCAAAGCTCTTTCCCTGCAAACACGAGAACCAGAGTTTGCTTTCTCAGAACCCATCTAAGTGCAGGTGGCTGTGGGGGCAGGCCGCCTGTAACCCCAAGGCTTGGGAAGTAAGAGGGGAGTCCTCAGGCTATCTGAGTAGTTAGGTTACTTGAATCTACGAGCTTCGGGCTCAGCAAGAGACCCTGCTTCAGTGAATAAAATGGAAAGTGCTTAGGGAAGCCTAATATTACTTTCTGGTTTCCACATGCCACCTGCAAATGTGGAAACACCAACATGCACATGCACACACATGAACACAAAATAACAGCATGCTTGGCTTCTGGAGTAGACTCTTCCTGGCATGCAGTCGCTTTCATATGACAAAGTCTGAAAATGAGGATTTTTTTTTTCCCTCTACTCATACAAATCGCAGCATTGTGGAATGACGTTTCCACTCATTGTCCTGGACTATCAAATGAAATTCTAAAGACCCTATCTGAACAGTCATGCTGAGCTTTAGATTTAACATGAATTTGAGAGGGTCATAGATTCTTTTGGTTTCCTAGACAGGTAATGATATTTGTAGATAATGATGTTATTTTTTTTTTTCTATTTTAGTTGTTTCCTTACATAAATTAGTATGATGTCCAGCACACTAGTGAAAGTAGTAAAAGCATATTTTTCTTTAGAATTATAATGAGGTATGCTCTCCATTATACTGATTTGCTTATTAGGATAGAGGGTTTTTTTAATATCTGGATTTTGCATAATGGTTTTATAGTATTTCTTTCTTTGTGAGGCAAAATTCCTCTTGGATTCATTAATTGCTTTCCCTGTATCCTCTGAGATGACTATCCTCATTGGCTGGTAGCACTCAAGTATCTAGGATTTCATTGTTCCATAATAATAAATACTGGAATGACTAAAAGGACTCCAAAATAAAGCAGTCATTTATTAATGATTATATATTATTTGTTTTCTGATGTTAACTTTAAATTCTTAGATACATTCAACTTGGACATTAAGGTTCATTTTTGTTTTGTGTGATTGCTGAGGATCAAACAAGCCCAGCTGAGGCAAGCACTCTGCCACTGAGCTATAATCTTGAGCCCAGTGGATCGATTCTACTACTTCATGTTGTTTATGCTTGCTCACATAAAGACTACCATAGATATTCTTGAGTAGCATTGGCATAGAACTTTTCCTTATATGTGAAGAAATGGAGTAGGGATAAGAAGAGTGCCTGTTTAGCAATGCACAAGGCTGTGGTTTCAGTCCTCAGCGCCACCAAAACAGCCAGATGTAAAACGAACTGACTGGTTTTAGCTGTAGATTAGAACAGTGTCATACACTGCAGTGAATGTATTCCTCTCCTGTCCTAATTCTAAACCTGTTCAGGTATCCTGATTTAGAATAATTGACACTGTTTTAGGTACCCGTTTTCTATTACCTTAAACTATTCAGTATCTTTTATGTTTATAGGACACCTAAGATTTACAGTATCATTTAAATTTTTTGAGTATATTTTTCTAGGCATGCTTTCATTTTCACATATGAAATTTATTTTTTCTTGTATTCCTGATGTTTCATGGTTGCATAATTAACTAACTTTGGGTCTGCCTTGTATTTCAATCTGCAATAATTTCTCCTTGTATTTAAATTGAGTTAATCCTCAGTCAGTATTCTTTTGGAGAGTATTTGTCTCAAACTACAGCATGTTGCCTCACACTGTAATCTTAGGGGTTGGGAAGCCAAGGCAGGAGGATCACAGATTTAAGGGGAGCCTGAGCCTGGGCTATTTTGTGAGACACTGTCTTAAGAAGACAAAAATAAAAAAATAAGACAAGACAAATGTGCCCAGGGAGGAGTTGGGGCCTGGTAAATAATCTGGGAGGGAAAAAAATTTTGTCTTGAAATACTTAACTTTCCAATATAGTTTTTATTTCATTGACTCTGGCAGGTATGTACATGGTTATATATTTTAATTTTCTTTTTGTATCCTTGGTTAAAAAAAATTTGGGGGGGAGGTGCTAGGATTCAAAGTGGGGGCTTTACACATGCTATAACCCAGGTGTAGATGTGTCTTTTATATATACTTTAGTTAGAGTTTTAAAACTCTGATTACTTGAAAATTCCTGATTAACAATTCTTTTAGACCATTATGTATAATGCAACTAGTAACAAAATTGGAATTTTAGCAACTTTTTTCTTCTGTATTTGTTGCATGTACCTTTTCTGTAATGTTTTCACTGAAAATTTTACCCAGTGCTTGAAATTTATGTACTCCATTTACTATTTAGTTGCTATTCTAAAACATTAAATCCAGTTTTAAAATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060510:ENSMUST00000174462:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=NA C2=0.051
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=4.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGCAAAGTTCCAGTGCA
R:
GGCTGTCTCACAGTCTGTGC
Band lengths:
345-741
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types