HsaINT0187661 @ hg19
Intron Retention
Gene
ENSG00000171469 | ZNF561
Description
zinc finger protein 561 [Source:HGNC Symbol;Acc:28684]
Coordinates
chr19:9718002-9724779:-
Coord C1 exon
chr19:9724697-9724779
Coord A exon
chr19:9722013-9724696
Coord C2 exon
chr19:9718002-9722012
Length
2684 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CTTTATCTCGTCATCAACAGACA
3' ss Score
8
Exon sequences
Seq C1 exon
AATGGGAAATACAACCTAGAACCAAACGGTCATCACTTCAGCAGGGTTTTTTGAAGAATCAAATATTCAGTGGGATACAAATG
Seq A exon
GTAAGATTCATGAGGGATATTTCTTAATTTCCTCTCTTAGAAAAGATAGAGAATTCCATTCTAGAAAATCAGCTCAGTCAGAGGTGTGGCTTACATCTGTAATCCCAGCTATTTGGGAGGCTGAAGTGGGGGTCTCATTTGAGCCCAAGAGTTCAAGACCAGCCTAGGCAGTATAGTAAGATCCCATCTCTGATTTTAAAAAGAAGGTGAATGTGGTGACTCACACCTGTAATCCCAACATTTTGGGAGGCCGAGATGGGTGGATCACTTGAGGTCAGGAGTTTGAGACCAGGCTGGCCGACATGGTGAAACTCCATCTCTACTAAGAATACAAAATTAGCCGAGTGTGGTGGTGGGCACCTGTCATACCAGTTACTTGGGAGGCTGAGACAGGAGAATGGCATGAACACAGAGGCAGAGGTTGCAATGAGCTGAGATTGCACCACTGCATTCCAGCCTGGTTGACCGAGTGAGACTCTGTCTCAGAAATAAAGAAAAGAAACTGAGTCTGTAATCCCATCCCTTTGGGAGGCCTAGGCACGTGGATCACTTGAGATTAGCACTTCGAGACCAGCCTGGCCAATGTAATGAAACTCTTATCTCTACTAAAAATACAAAGTTAGCCAGGTGTGGTGGCAGGCACCTGTAATCCCAGATACATGGGAGGCTGAGGCAGAATTGCTTAAACCCAGGAGGTGGAGTTTGCAGTGAAAAAGAAACTGCACAAATGAGAGATACTTGAGAGAATTAGAGAAGAATTCTGCACCACTGAGGGAGCAGGATCTCTGGAGAGATAGTCTGAATGTGATGAATTTTATGATATTCCATATCTGTATAACTTGTCACCTCAAAATACCCACAAGTACACATTCCCACATAAGTAACTAGACATTGAGGATTTACACAGTTTCATGAAAATCTACACTATTTGACTGGGTGCAATGGCTGACACCTGTAATCCCAGCACTTTGGGAAGCTGAGGCAGGAGAATCACTTGAGCCTAGGAGTTCAAGACCAGCCTGGTCAACAGAGACCCTGTCTCTACAAGGAATAAAAAATTAGCAGGGCGTGTTGGCATGCACCTGTAATCCAAGCTCCTTGGGGGACTGAGGCAGGATGATGGCTTCAGCCTGGGAGATTAAGGCCACAGTGAGCTGTGATTATGCCATGGTACCCAGCCTGGGTGACAGAGTGAGACCTTGTCTCAAACCACCCTGCATAATAATAAAAAAACCCTACAGTTTTCTTTTTTTGAACAATTAGAGCCAGTGGCGTAGAATTCTGGCAAAAGGGCCCATCATTCAATCTGGAAGAAATCAAGAAGTCAGGGAATAAAAACAAGGAAGAAAAATTGTAAAAATTATAATTATCAAAGTAGGCTGACATGGTAGCTCATGGCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGTGGGGTTTTGTGAAGAGTTTGAGATCAGCCTAGGCTACATAGTAAGACTTTGTCTCTATAAAAATAAATTGAGGCTGGGTGTGGTGGCTCACGCCTGTAATCCCAGCAATTTGGGAGGTTGAGGCAGGCAGATCATGAGGTCAGCAGTTCAAGACCAGCCTGGCGAACATGGGGAAACCCCATCTCTACAAAAAATAACAAAATTAGCTGGATGTGGCTACACCTGCCTGTAATCCCAGCTATTCGCGAGGCTGATGCATGAGAATCACTTGAGCCTAGGAGGTGGAGGTTGCAGTGAGCCAAGATCTCGCCACTTGCACTCCAGCCAAAGTGAGACTACATCTCAAAAATAAATAAACTGAGGTGGGGCATGGTGGCTCACCCCTGTAATCTCAGCACTTTGGGAGGCCAAGGCAGGCAGATCATCTGAGGTCAGGGGTTCAAAACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAACTACAAAAATTAGCCAGGCATGGTGACCCATGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCAGAGTTTGCAACGAGCCGAAATCATGCCATTGCACTCCAGCCTGGGCTACAGAGCAAGACTCTGTCTCTAAATAAATAAATAAACAAACAAACTGAAAGATTGGCCAGACATGAGGGTGCATTCAAATAGTTCTAGCTACACAGGAAGCTAAGGCAGGATGATCACTTGAACTCAGCCAGGAGTTTGAGGTTACAGAGAGCCATGATCACACCAGTGCACTATAGTCCAGGCAATGGAGCAAAACCCCAACTCTGAAAAAAGTGAAACATACTGGGTGTGGTGGGTCATGCCTGTAATATCACCACTTTGGGAGGCCGAGGCAGGCAGATCACCTGAGCTTAGGAGTTTGAGACCAGCCTGGGTAACTTGGCAAAACCTTGTTTCTACAAAACAGAAAAATTAGCCAGGTGCAGTGGTGCACACCTGTATTCCTAGCTACTCGGGAGGCTGAGGCAGGAGAATCAGTTGAGCCTGGGAGGTGGAGGTTGCCGTTAGCTGAGAGTGTGCCATGCACTCCAGACAGGGAGATAGAACAAGACTTTCTCTCAAAAAGAAAAAAAAATTAAATATTAAAAAGTAAAATCATAATTGTCATCAAAATGCTTCTGTGTTCAGATGGGTGAAATCTCTTAATATGTCTGAAAATGTTTTAAAACCTTTATCTCGTCATCAACAG
Seq C2 exon
ACAAGAGGCTACAGTGGATGGAAACTCTGTGACTGTAAGAATTGTGGAGAGGTCTTCAGGGAACAGTTTTGCCTTAAGACACACATGAGAGTTCAGAATGGAGGGAATACTTCTGAGGGTAATTGTTATGGAAAAGACACCCTCAGTGTGCACAAGGAAGCCTCTACTGGACAGGAACTTTCCAAATTTAATCCATGTGGAAAAGTCTTTACTCTAACTCCAGGTCTTGCTGTACATCTTGAAGTTCTCAATGCAAGACAACCCTACAAATGTAAGGAATGTGGAAAAGGCTTTAAGTATTTTGCAAGCCTTGATAATCATATGGGAATCCACACTGATGAGAAACTCTGTGAATTTCAGGAATATGGGAGAGCTGTCACAGCTTCTTCACACCTAAAGCAGTGTGTAGCAGTTCATACAGGAAAGAAATCCAAAAAGACTAAGAAATGTGGGAAATCCTTCACTAATTTTTCTCAACTTTATGCACCTGTGAAAACTCATAAAGGAGAGAAGTCCTTTGAATGTAAAGAATGTGGAAGATCCTTTAGAAATTCCTCATGCCTTAATGATCACATTCAAATTCACACTGGAATAAAACCACACAAGTGTACTTACTGTGGGAAAGCCTTCACTAGATCAACTCAACTTACTGAACATGTAAGAACTCACACTGGAATAAAACCCTATGAATGTAAGGAATGTGGCCAAGCCTTTGCTCAGTACTCGGGCCTTTCTATACACATACGAAGTCACAGTGGAAAGAAACCCTATCAGTGTAAGGAATGTGGGAAAGCCTTCACTACATCCACAAGTCTTATTCAGCATACAAGAATTCACACAGGAGAGAAGCCTTATGAATGTGTTGAATGTGGGAAGACCTTCATTACTTCTTCCCGTCGTAGTAAACATTTGAAAACTCATAGTGGAGAAAAGCCCTTTGTATGCAAGATATGTGGGAAAGCATTTCTATATTCCTCACGCCTTAATGTTCACCTGCGAACTCATACCGGAGAGAAACCCTTCGTATGTAAAGAATGTGGGAAAGCATTTGCTGTTTCCTCACGCCTAAGTAGACATGAAAGAATTCACACTGGGGAGAAACCCTATGAATGCAAGGATATGAGTGTTACCATTTAGCCCATCGGTTGCCATCTTTAATTATTGGCAATGACACCAAAGATTATCAGATTTGTCCTAAATGCCTTTTGGAGGTTGTAATGACTCATGGATTGGCCTTAGATACCATCCTGAGGGTCTGAAATTAAACCTACAGGTTCTGAATACAACATCATGGTTGCCTGAGTCTGGGCATCTGTGAAGAAGGGTCATGGATGGTGAGGTCAGTACTGCAGGCTGCCTCACCTTGGTGATTAGATTCCTAAGATCATAGCATTAACAAGTTGTGTATGAGATAAATCATGCAGATTGACCCCAGCCCCTGTTGGTTAGTGGCTGCCAGTGTGGCACATTTATGTCAAAATTTACCAGAAGCCAAGATGATGTAGGACCCCAAAGGTGGGTTGTTAAGAGATGCTCCTCCAAGGGTCTCTTCTGATCCCACGGATCCTGCAGAGCGTGTCAGGAATGAAACCATCCATAACTGCCAGTGCCCTTTCACAGCTGATTATTTCTGTGTCCCCTTGTAAAATCTAAGAAGTGTGACAGCCTTGCCTGTTCTGCCTTGTATGTCTATTTTAGATGGCACAATGTAAGTGGCAATGTCTCTTCTAGTATAATCCAGTCTCTCTTCTCACTTCTGTCAAGGTGGCTGATATAGTCCATGAATCCCACTCATGATCTCTTTATCAGATGATCGTTCAGCCACACTTTGAGGATTCTCTTCAGTACAAGTTTTCTAATTTTTGCATTATGGATAGGCTGAGAATTTTCCAAATCTCCAAGTTCTGGTTCCTTTTTCCTTAACAATTTTTTCTGCAATTCAGGTCTCCTTTTGCATTTTTGCTGAGACCAGCTGGGTCATGGAGACCCTGACCCAGCAGCTCTAGAGGAATTAAGACAAAGACACAGAAATAGAGTGCAGAGTGGGAATCGGGGCTCACAGCCTTCAGAGCTGAGAGCCTTGAACAGAGTTTGACCCACATATTTATTGACAGTAAGCCTGTGATAAACATTATTTCTATAGATTATAGATTAGCTAAAAGTATTCCTTACAAGAAAGAAAGGGACAGGCTCTGGCTTGTTATCTGCAACAGGAACATGTCCTTAAGGCACAAATCACTCATGGTATTGTTTGTGGTTTAGGAATGCCTGAGCAGTTTTCCAGTTTTCCACCGTGGGTGGGCCAGGTGTTCCTTGCCCTCATTCGGGTAAACCAGCAACCTCCAGCATGGGTGTCATAGCCATCACGAGCATGTCACAGTGCCGCAGAGATTTTGTTTATGGGCAGTTTCTCATGGCCTGTTTATGTCCAAATTTGGGGGGCCTGTTCTGAGCACATTTTCCTGTAAGCACTCAGGAAGAATGAAGCTTCCTGTGTCCTTTAACACTTTAAGTACAGATCTTAGTGATACATAACCAGTTTTATCTCTCTCAAGCTCTACCTTCCGCAAAGTGCTAGAATACAGTTCTGCCAAGTTCTTCACTACTTCGTATCAAGGGTTGTATTTTCTTTATTTCCCAATAGCATGTTCCTCATTCCCCAATGACACCTCACCAGGATCACCCTTACCAACCTTACTTCCAGCTTGCACATCAGAATTTTTCCAGCCTCATTTGTCAGTTTCAAATCTGCTTCACATTTTTAGTTTTTTTGTTTGTTTGTTTTTAATCTGCCTTAATGAGCTCAGGCCACTATCACAAAATACCACAGACCAAATGGCTTACAAATTTGTTAATTTTAAATAAATGAGGTTAAAAACAAATTTATATTCTCACATTTCTCGAGGCTGGAAGTCTGAGATCAGAGTGCCAGCATGGTCAACTTCTGGCGAGAGCTCTCTTCCTGGTATGTAAATGCCCACTTCCTCATGTCTTCACAGGAAGGAAACCAACAAATAGGTCTCTCTCTCCTCTCTCCTTTCTCCTCTCTCCTCTCTCCTCTTTCTCTCTCTCTCCCCACCATCTCTCTCCTTCCCCTCCCTCCCCCTCCCTCCCCCTACCCATCTCTTGACATCATTTCACGATACTTCTAAAGAGCCTATTTTCAGGCCGGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACTGTCCTAGTTAACACGGTGAAACCCTGTCTCTACTACAAATACAAAAAATTAGCCTGGCGTGGTGGCGGGTACCTGCAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCTGGGAGGCACAGGTTGCAGTGAGCCGAGATCGCAGCCACTGCATTCCAGCCTGGACAACAGAGCGAGACTCTGTCTCAAAAACAAAACTAAAAAACCCTATTTTCACATACAGTCACATTGGGATTTGGAGCTTCAACATATGAATTTTCAGGGTTATCATTCAGTCCAAAGTACTTAATATGATTCTTTTCCGTTTCCACATAGACAATCACATAATCTGTAAATAATGACTCTTACTTTTCCACTTTAGTCGTTAGGTTATACCTATATATATATTTTCTTGCTTTACTGGACTAATTTCAACCTCCAGCACACCACCAATGAATAGCAGTAATACCAGCATAATTGTCTGCAGTTCTGCTGAGATACGTGCTCTATTTTATTGGCTTGGCTGTAGGTTTTTATTTTATTTTTTGAAGAGGCTAATCTCTTACAGGAAAGGTTTCTTTTTATATCCAGTTTTTACATGATGAATGATTTCCCAGTATTTCATAATTCATGAGGCTGAATTCCTCTTGAATTTATTAAATGCTTCCTGTGCATCCTCTGTGATGATCATGTTTATTTACTGCTAGAACTCAAGTACCTAGAACTGTTCCTGGCCAATGATGGTATGTAATAAATACTTCAATGAAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171469-ZNF561:NM_152289:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.007
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=5.8),PF0009621=zf-C2H2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=6.6),PF0013017=C1_1=WD(100=13.2),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.6),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=5.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)