HsaALTA1053415-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000196678 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:HGNC:30541]
Coordinates
chr16:20800302-20801359:-
Coord C1 exon
chr16:20801203-20801359
Coord A exon
chr16:20800315-20800402
Coord C2 exon
chr16:20800302-20800314
Length
88 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TTTTAATGTACCTAATGCAGACT
3' ss Score
5.5
Exon sequences
Seq C1 exon
GCTCAAGTTGATGAAGGAGTCCCTCTGAAGATTTGCTTATCTCAGTTCTGTAAATGGATTCATAAGATTCAGCAACAGAAGAACATTATTTTTGCTACTGGGATTTCAGAGCCTTCTGCTTCTGAAGTAAAATTATGTGCATTTGTTACTTGGTCAG
Seq A exon
ACTGGGACTTGGGGGTTTGCCTGGAGTATGAGTGTAAAAGAAAGCAGCTGTTAAAACCTGTGTTTTTAAATTCTTGGATTGATCTCAG
Seq C2 exon
AGCAACTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196678-20-29,20-28-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PD(39.3=79.2)
A:
NA
C2:
PF0092919=RNase_T=FE(17.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains