HsaINT0057796 @ hg38
Intron Retention
Gene
ENSG00000196678 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:HGNC:30541]
Coordinates
chr16:20800302-20801359:-
Coord C1 exon
chr16:20801203-20801359
Coord A exon
chr16:20800403-20801202
Coord C2 exon
chr16:20800302-20800402
Length
800 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TTTTAATGTACCTAATGCAGACT
3' ss Score
5.5
Exon sequences
Seq C1 exon
GCTCAAGTTGATGAAGGAGTCCCTCTGAAGATTTGCTTATCTCAGTTCTGTAAATGGATTCATAAGATTCAGCAACAGAAGAACATTATTTTTGCTACTGGGATTTCAGAGCCTTCTGCTTCTGAAGTAAAATTATGTGCATTTGTTACTTGGTCAG
Seq A exon
GTAAAGAATAAGTTATACCTATTAATCACAGATGGGTAGCATTACCACTATGTAATTCTTTATTTCTAGTTTTATACTTGCTAACCTAGAATTATGTTTGTTAATCTTCTGGGCTAGGAAAAAAAATTTAAATGCCTAGCAGATGTTAGCCAAGAAAAGTAAATTAATACATATTTTTTAAATTAACCTTTTGGGATACCTTAAAATATTAAGCCTGAACTTAAAAAAATGTTTCTAGAGTTCCACTGTTAAGAATTAAGCAAAGATGATTTAGTGAACACTCTTATGCTATTTTCTACAGTCTTCATCAGCTCAACATCCTTTGCTTTTATGCTTTGACACTTAAAAGAAAAAAAAAATGAGCCATTTAAAGTAGGTTTTTTGTATGACTGTGTTAGAGCATTGCTGTTAATAGTCATTAATAGCAATACTGTGTCATTGATAAGATAGCATTGATAGTCATATTTGGTTTCCAGTTACTATAAAATGTTTGGTTTCTCAATAACATTAATATTTTCCTAGAATATAGAAAATATAGTCCTTGTAATTTAACATGTTACTCTTCTTTCTGAAATAAGGTTTTACTGGGTGTTTAAGAAATCATTTTGAAATTTAGTCATCAACCTAACTTGTTAATAGTAAGTTATATAAAGTGAATAATTTTTAGATATTAGCAGAGCAATGAAATCATACTGTTCTATTTTATATGATCTTCTAGCATTCTATTTGTAAATGGTGGCAGCATAAGTAAAAAATGCTGGCATCATTGACTTTGTTCTATTTTAATGTACCTAATGCAG
Seq C2 exon
ACTGGGACTTGGGGGTTTGCCTGGAGTATGAGTGTAAAAGAAAGCAGCTGTTAAAACCTGTGTTTTTAAATTCTTGGATTGATCTCAGAGCAACTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196678:ENST00000300005:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PD(39.3=79.2)
A:
NA
C2:
PF0092919=RNase_T=FE(17.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAGTTGATGAAGGAGTCCC
R:
TGTAAGTTGCTCTGAGATCAATCCA
Band lengths:
256-1056
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development