BtaINT0057681 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006448 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:HGNC:30541]
Coordinates
chr25:18665636-18667268:-
Coord C1 exon
chr25:18667112-18667268
Coord A exon
chr25:18665737-18667111
Coord C2 exon
chr25:18665636-18665736
Length
1375 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TTCTAATATTCTTGATGCAGACT
3' ss Score
5.41
Exon sequences
Seq C1 exon
GCTCAAGTTGATGAAGGAGTCCCTCTGAAGATTTGTTTATCTCAGTTCTGTAAATGGATTCAGAAGATTCAGCAACAGAAGAAAATTATTTTTGCTACTACAGTGTCAGATATTTCCACTTCTGAAGTAAAATTATGTGCGTTTGTTACTTGGTCAG
Seq A exon
GTAAAAAAAATAACTTATATTTAGCAATCATTAATGAGTAGCATTGCCACTAGGTAATTCTTTATCTCTAGTAAGAATTACACTTGTTACCTTCCTGGCCACAAAAAGAAATCTTAAATGTCTAGCATGACGTTAACCAACAAAAGTAAACTTATTCATATTTTAAAATTTTTAAACACCTTTAAAAGTTAAGCTCTAAATTTTAAGAATCTTTCTAGATTTCTCTGTTCTCCTGAATCTGGGCAAAGACCGGTGAAAGATTTTTTATCATGGTATTTCTACAACTTTGATAAAAAGAATCCATATTCACCTTGCAATCTTTGCTTTTATACTTTCACGCTTCTAATGTAGACATCAAGGGAAAAAATGGGCCATTTAAAGTACATCTTTTATATGCCCTGATAGAGCATTGCCATTAATAGTCATTGTTAACAGTGCTCTGTCACTGACAGCATAGCATTGATAATTGTGTATGAGTCTGTATGATCAGGCCATTCAAGATGGCTGTTCTTTTGTTCTCTGTATACCCCTGCTTGACCTATACCCTACTCATATCAGTGACCTCCCCTCTTAATACATACTTGCCCTTAGCCCCAGCTAGTGATTGTTCTAATCTTTAGATCTTTAGACCAGAATCTTTATCTCCACCATGATAGCTTATCAAAGGGACATGAGGGCTTTCTCCTCAGCTGGTTTCCCTGGTAACTGATGAACCAACTGATGTCAATTCCCTCTATAACTGGTAAAACCTTGCCGAAGACTGCTGCCATCATGTCCTGCCCACCATCTGCTTCACATGATGGAGTATGCTCCAAGACCATGCTTCAGACATGTACAATCCCCCTGTTCATTAAACCCTTGATGTCTCTGTCACTGACTCTGGGCTCTTTCTTTGGTCTTGAGGTTGGGCAAGTACAGTGCTTGCATGGCTGTGGGGTATAGCCCAACAGGGTCCCTGTAAGATGTTTGGTTTCTCAGTTACATTAATATTTTCTAGAATGTTGAAAGCAGATAATCTTTTCCATCTAAGCCTTGTGATGTGACACCTTACTCTTCTTTCTGAAATGTCAATGTGTTTTACTGGGCTTTTAAGAAATCATTTTGAAACTTAGTTACTGACCTAATTTCTTACTAGTAAGTTATGAGTAATTTTTAAATATTAGGGCAAAAAAATCTTACTCTTCTATTATGTGTTGCATAGTATATAATATATACCATATGTTGTATATGCTATATATAAAATATAGTATAGTGTATGTTGTTATATATTATTCTAAGTTCTGTTTTATGTCGACTTTCAGCATTTTGTTTATAAATAATAGCGTAAGTAAAAACCGTTAGCATCATTGACTTTGTTCTAATATTCTTGATGCAG
Seq C2 exon
ACTGGGACTTGGGGGTTTGCCTGGAGTATGAATGTAAAAGAAAACAACTGTTAAAACCTGTGTTCCTTAATTCTTGGATTGATCTCAGAGTAACTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006448:ENSBTAT00000008456:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(27.5=100)
A:
NA
C2:
PF0092919=RNase_T=FE(17.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAGTTGATGAAGGAGTCCC
R:
TGTAAGTTACTCTGAGATCAATCCA
Band lengths:
256-1631
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]