GgaINT0012565 @ galGal3
Intron Retention
Gene
ENSGALG00000002214 | ERI2
Description
NA
Coordinates
chr14:15640139-15640695:-
Coord C1 exon
chr14:15640539-15640695
Coord A exon
chr14:15640240-15640538
Coord C2 exon
chr14:15640139-15640239
Length
299 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TTCTTGTCCTCCCTGTGCAGACT
3' ss Score
10.35
Exon sequences
Seq C1 exon
AAACAAGTTGATGAAGGAGTCCCTCTGCACATCTGCTTGTCACAGTTCTTGAAGTGGCTTCAGGAGATACAAAAGGAGAAGAAAATTCTGTTCAGCTCAGATATCCCAAGGAATGCCATTCCAGAGGCAAAGCTGTGTACTTTTGTTACCTGGACAG
Seq A exon
GTAGGCAACATTCCCTTTTGCTTATTGCACAAAGCAGCGCACGTTAAAAAGGAGCACTTGGGGGGACTGTTATTCGTGCCTGGTGTAGGACTGTCCTGCAGTGATGGCTGTAAGGCAGCAGCGCCCACCACCCCATCGCAGGTCTGCTGCTATGTGGCTGTGCACCTTCTTGCCCAGCTGTTGGTTTGTTTGCTTGTTTGGTAACCTCTGGGTCGTTCAGATGAGAATAATGCCCAATTTGCAGGTGTTAGGATTAAAGAAACGTTAATTCTTTGCTTGTTCTTGTCCTCCCTGTGCAG
Seq C2 exon
ACTGGGACCTGGGTGTGTGCTTGCACTACGAGTGTAAGAGGAAGCAGTTATGGAAACCTGACATCTTCAATTCATGGATTGATCTCAAAGCAACATACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002214:ENSGALT00000003470:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(27.7=100)
A:
NA
C2:
PF0092919=RNase_T=FE(17.6=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGATGAAGGAGTCCCTCTGC
R:
CCTGTATGTTGCTTTGAGATCAATCC
Band lengths:
252-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]