GgaINT1012446 @ galGal4
Intron Retention
Gene
ENSGALG00000026038 | ERI2
Description
ERI1 exoribonuclease family member 2 [Source:HGNC Symbol;Acc:HGNC:30541]
Coordinates
chr14:14926061-14926617:-
Coord C1 exon
chr14:14926461-14926617
Coord A exon
chr14:14926162-14926460
Coord C2 exon
chr14:14926061-14926161
Length
299 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TTCTTGTCCTCCCTGTGCAGACT
3' ss Score
10.35
Exon sequences
Seq C1 exon
AAACAAGTTGATGAAGGAGTCCCTCTGCACATCTGCTTGTCACAGTTCTTGAAGTGGCTTCAGGAGATACAAAAGGAGAAGAAAATTCTGTTCAGCTCAGATATCCCAAGGAATGCCATTCCAGAGGCAAAGCTGTGTACTTTTGTTACCTGGACAG
Seq A exon
GTAGGCAACATTCCCTTTTGCTTATTGCACAAAGCAGCGCACGTTAAAAAGGAGCACTTGGGGGGACTGTTATTCGTGCCTGGTGTAGGACTGTCCTGCAGTGATGGCTGTAAGGCAGCAGCGCCCACCACCCCATCGCAGGTCTGCTGCTATGTGGCTGTGCACCTTCTTGCCCAGCTGTTGGTTTGTTTGCTTGTTTGGTAACCTCTGGGTCGTTCAGATGAGAATAATGCCCAATTTGCAGGTGTTAGGATTAAAGAAACGTTAATTCTTTGCTTGTTCTTGTCCTCCCTGTGCAG
Seq C2 exon
ACTGGGACCTGGGTGTGTGCTTGCACTACGAGTGTAAGAGGAAGCAGTTATGGAAACCTGACATCTTCAATTCATGGATTGATCTCAAAGCAACATACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026038:ENSGALT00000045747:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(27.7=100)
A:
NA
C2:
PF0092919=RNase_T=FE(17.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGATGAAGGAGTCCCTCTGC
R:
CCTGTATGTTGCTTTGAGATCAATCC
Band lengths:
252-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]