HsaALTA1054352-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000197859 | ADAMTSL2
Description
ADAMTS like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr9:133536563-133537547:+
Coord C1 exon
chr9:133536563-133536802
Coord A exon
chr9:133537405-133537412
Coord C2 exon
chr9:133537413-133537547
Length
8 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TGGGGGTCCCTCTCACCCAGGAC
3' ss Score
6.71
Exon sequences
Seq C1 exon
GGTCTGCCAGACAACCACGACCAACTAGTCCCAGATAACCTTGAGGCCTGGGCACTGGCTGGGCCCCGAGGGCTCTTCCCAAAGCGTACCCTGGTCATCTGGAAGAGGATCGGAGCTGGCCTGGTGGTGACAGTGGCCTTGCTTCCTAGGATGGATGGCAGATGGCAATGTTCCTGCTGGGCCTGGTTCCTGCTGGTTCTGGCAGTTGTAGCTGGGGACACAGTGTCAACCGGGTCCACG
Seq A exon
GACAACAG
Seq C2 exon
CCCAACATCCAATAGCCTGGAGGGGGGCACCGACGCCACGGCCTTCTGGTGGGGGGAGTGGACCAAGTGGACGGCGTGTTCCCGCAGTTGCGGGGGTGGGGTGACATCCCAGGAGCGGCACTGCCTGCAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197859-4-6,4-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.260
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009014=TSP_1=PU(49.1=56.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGCAATGTTCCTGCTGG
R:
CCCCTCCAGGCTATTGGATGT
Band lengths:
106-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains