MmuALTA1027748-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000036040 | Adamtsl2
Description
ADAMTS-like 2 [Source:MGI Symbol;Acc:MGI:1925044]
Coordinates
chr2:27081704-27082524:+
Coord C1 exon
chr2:27081704-27081794
Coord A exon
chr2:27082382-27082389
Coord C2 exon
chr2:27082390-27082524
Length
8 bp
Sequences
Splice sites
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
3' ss Seq
GGGGGGTGCTTTTTACCCAGGAC
3' ss Score
4.54
Exon sequences
Seq C1 exon
GATGGATGGCAGACGGCAGCATCCACACTGGGCTTGGTCCTTGCTGGCTGTAGCAGTTGTGGCTGGGGGTGCGGCACCTACGGAGGCTTCC
Seq A exon
GACAACAG
Seq C2 exon
CCCCACATCCAACAGCCTAGAGGGAGGTGCTGACACCACTGCCTACTGGTGGGGGGAGTGGACCAAGTGGACAGCATGTTCCCGCAGTTGTGGGGGCGGGGTGACATCCCAGGAGCGCCACTGCCTTCAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036040-4-4,4-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.292
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009014=TSP_1=PU(49.1=56.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGTCCTTGCTGGCTGTAG
R:
GTGTCAGCACCTCCCTCTAGG
Band lengths:
95-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types