HsaALTA1054400-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000197893 | NRAP
Description
nebulin related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr10:113588979-113589797:-
Coord C1 exon
chr10:113589666-113589797
Coord A exon
chr10:113589080-113589082
Coord C2 exon
chr10:113588979-113589079
Length
3 bp
Sequences
Splice sites
5' ss Seq
TACGTGAGT
5' ss Score
7.77
3' ss Seq
TGGGGTATGTTTGATTTCAGCAG
3' ss Score
3.57
Exon sequences
Seq C1 exon
GTCAAGTATAAATCAGACTTGAACCTGACCAGAGGTGTTGGCTGGACCCCTCCTGGCTCCTACAAAGTGGAAATGGCTCGGCGGGCTGCGGAACTGGCCAACGCAAGGGGCCTGGGTCTCCAGGGAGCTTAC
Seq A exon
CAG
Seq C2 exon
CGGGGGGCAGAAGCAGTGGAGGCTGGAGATCATCAGAGTGGGGAGGTGAACCCAGATGCCACTGAGATTCTGCACGTCAAAAAGAAGAAGGCCCTGCTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197893-68-61,68-60-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.352 A=NA C2=0.650
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(39.3=25.0)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTCTCCAGGGAGCTTAC
R:
CGTGCAGAATCTCAGTGGCAT
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains