HsaINT1025303 @ hg38
Intron Retention
Gene
ENSG00000197893 | NRAP
Description
nebulin related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr10:113588833-113589797:-
Coord C1 exon
chr10:113589666-113589797
Coord A exon
chr10:113589080-113589665
Coord C2 exon
chr10:113588833-113589079
Length
586 bp
Sequences
Splice sites
5' ss Seq
TACGTGAGT
5' ss Score
7.77
3' ss Seq
GGTATGTTTGATTTCAGCAGCGG
3' ss Score
1.97
Exon sequences
Seq C1 exon
GTCAAGTATAAATCAGACTTGAACCTGACCAGAGGTGTTGGCTGGACCCCTCCTGGCTCCTACAAAGTGGAAATGGCTCGGCGGGCTGCGGAACTGGCCAACGCAAGGGGCCTGGGTCTCCAGGGAGCTTAC
Seq A exon
GTGAGTAGCAAGCTGCAAAGCCACCCCTGGCTTGCAAGGCCATGGGGAAAGACAAACTCATTGTTTCTTTTCAAAGTTTATTTTTGGCCAAAGGTCAGCTAGCTCTAAAGAAGTGTGAAACGCAGCTCAAACAAGGCGCCTAATTTCATGGGTCTGAGATGACCAGGCAGATGACACGCAGGTTAAACTTCCTGCAGGGCTTTCTCTGAAGTCACAGCCATTAGTTCTGCAGAGGCAAACCTACCGGGGCTACATCAATCCCGGGCCAGGGCAGCCCAGGCTGTGCTGACTGCTTGCTCGTTACATTCGCAGAAAGGGTCAGGGACTCGCTGGATATGACAGTCTGCATTTTGAACCCTACTTTGTTCAGAAGAAAGAAGCCAGGTCTAAATGAGAGATTGGCTTTGCTTTCTCATTCCTGCCTTGAAGGCCCTTTTTCTTGGGGAGGGTAGAAGAGGGGAAAAGGAAAGGGAGGGTGAGCCTGTTAAATGCTCCCTGTGCTTCTTAGCGTGTCCTGTGGGAACCGGGGCCGGGAGTGGGGGTGGGGGAGCTTCATTTTAACTTGGGGTATGTTTGATTTCAGCAG
Seq C2 exon
CGGGGGGCAGAAGCAGTGGAGGCTGGAGATCATCAGAGTGGGGAGGTGAACCCAGATGCCACTGAGATTCTGCACGTCAAAAAGAAGAAGGCCCTGCTGTTGTGAGCCATGTCCACCCTGATTCCTGAGAGGCCAGAGAGGAAGTTTGTTCACCAGAGACAGGCTTCAGATGGCTTTGATTTCGGCAAGCTGGAATGGCCCACCAGCCCATCCCAGATCTTCCTTTATTAAAATAATAACTCTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197893:ENST00000359988:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.352 A=NA C2=0.647
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(39.3=25.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTGAACCTGACCAGAGGTG
R:
AAGGAAGATCTGGGATGGGCT
Band lengths:
342-928
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains