MmuINT0110621 @ mm10
Intron Retention
Gene
ENSMUSG00000049134 | Nrap
Description
nebulin-related anchoring protein [Source:MGI Symbol;Acc:MGI:1098765]
Coordinates
chr19:56320041-56321016:-
Coord C1 exon
chr19:56320885-56321016
Coord A exon
chr19:56320303-56320884
Coord C2 exon
chr19:56320041-56320302
Length
582 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
GCTATGTGTGGCTTCCGCAGGTG
3' ss Score
8.74
Exon sequences
Seq C1 exon
GTCAAGTACAAATCTGACTTGAACCTGACTCGAGGTGTTGGCTGGACCCCTCCTGGCTCCTACAAAGTGGAAATGGCTCGACGGGCTGCAGAACTGGCCAACAGGAGGGGCCCGGGGATCCGGGGGGCTTCT
Seq A exon
GTGAGTAACAGGCCGCAAGCTGCACCCTGCCTTGCGAGACCACGGGAAATACAAACCCGTTGTTGCTTTTCAAAGTTTATTTTTGGCCAAAGGTCAGCTAGTTCTAAAGAAGCGTGAAAGGCAGCCGAACAAGGCGCCTAATTTCATGGGTCTGAGATGACCGGGCGGATGACACCTGGGTTAAACTTCCCGCGGGCTTCCTCTGAAGTCACAGCCATTAGTTCTGCAGAGGCAAACCTACCAGGGCGACATCAATCCCGGGCCAGGGCAGCCCAGGCTGTGCTGACTGCTTGCTCGTTACATTCGCGGAAAGGGTCAGGGACTTGCTGGCTCCAGCAGTCTGCATTTTGAACCCTACTTTGTTCAGGAGAGAGACAGCACATCTAAATGAGAAGCAGGTTTTGCTTCCTTCTCATCTCTGCCTTGAGGATCCTTTTTCTTGGACCGGGGTGGAAGAGAGGACAAAGGAGGGGTGGGGAGCTCGTTAGATGTTTGCCGGGCATCTTAGCACGGCTTGTGGGAGCAGCAACGGGGTTTCCTGTGAACTCAGTGGAGGTGGGGCGCTATGTGTGGCTTCCGCAG
Seq C2 exon
GTGGAGCCAGAGGCAGCAGCGGCGCTAGGAGATCATCAGAGCAGGGGGGTGAACCCGGATGCCTCGGAGATCCTGCATATCCACAAGAAGAAGACTCTGCTGATGTGAGCCTCCTTAAGAAGCCCCCTTGAGGGCTGCTTGCCAAAGGCATGCCTCTGTGGCTTTGGTCTGGATGAGCGAGTGTTTTAAAAAAAAAAAAAAACTGGCACACCCTCCCCGTGCCCACATCTGCCTTTATTAAAATAACAACTCTGAAAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049134:ENSMUST00000073536:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.618 A=NA C2=0.722
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(39.3=25.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTGACTCGAGGTGTTGG
R:
ATAAAGGCAGATGTGGGCACG
Band lengths:
350-932
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types