RnoINT0103065 @ rn6
Intron Retention
Gene
ENSRNOG00000016714 | Nrap
Description
nebulin-related anchoring protein [Source:RGD Symbol;Acc:1306731]
Coordinates
chr1:277104519-277105486:-
Coord C1 exon
chr1:277105355-277105486
Coord A exon
chr1:277104771-277105354
Coord C2 exon
chr1:277104519-277104770
Length
584 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
TCTGTGTGTGGCTTCTGCAGGTG
3' ss Score
10.85
Exon sequences
Seq C1 exon
GTCAAGTACAAATCTGACTTGAACCTGACTCGAGGTGTTGGCTGGACCCCTCCTGGCTCCTACAAAGTGGAAATGGCTCGTCGGGCTGCGGAACTGGCCAACAGGAGGGGTCTGGGGATCCAGGGGGCTTCT
Seq A exon
GTGAGTAACAAGCCACACACTGCACCCTGCCTTGCCAGACCACGGGAGATACAAACTCATTGTTGCTTTTCAAAGTTTATTTTTGGCCAAAGGTCAGCTAGTTCTAAAGAACTGTGAGAGGCAGCTGAACAAGGCACCTAATTTCATGGGTCTGAGATGACCAGGCAGATGACACATGGGTTAAACTTCCTGCAGGCTCCCTCTGAAGTCACAGCCATTAGTTCTGCAGAGTCAAACCTACCAGGACGACATCAATCCCGGGCCAGGGCAGCCCAGGCTGTGCTGACTGCTTGCTCGTTACGTTTGCCGAAAGGGTCAGGGACTTGCTGGCTCCAGCAGTCTACATTTTGAACCCTACTTTGTTCAGGAGAGAGACGCCACATCTAAATGAGAAGCAGGCTTTGCTTCTTTCTCATCTTTGCCTTGAGGGTCCTTTTTCTTGGGCAGGGTGGAAGAGAGGACAAGGGAGGGGAGGGGGATACGTTAGATGTTTGCCGGGCATCTTAGCACGGCTTGTGGGAGCAGCGAGGGGGTTTTCCTGTGAACTCAGGGAAGGGGGGGGGCTCTGTGTGTGGCTTCTGCAG
Seq C2 exon
GTGGAAACAGAGGCAGTGGAGCTTGGAGATCATCGGAGCAGGGGAGTGAACCCTGATGCCTCGGAGATCCTACATATCAACAGGAAGAAGACTCTGCTGATGTGAGCCTCCTTGAGAAGGAAGCCGCCTTGAGGGCTGCTTGCCAGGGGCAGGCCTCTGCAGCTTCAGTCTGGACGAGTGGTTAAAAAAAATGGCACACCCTCTCCATTCCCACATCTGCCTTTATTAAAACAACAACTCTGAAAGCAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016714:ENSRNOT00000038017:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.676
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(40.7=25.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTTGAACCTGACTCGAGGT
R:
AAAGGCAGATGTGGGAATGGA
Band lengths:
342-926
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]