HsaALTA1054420-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000197928 | ZNF677
Description
zinc finger protein 677 [Source:HGNC Symbol;Acc:HGNC:28730]
Coordinates
chr19:53242211-53243897:-
Coord C1 exon
chr19:53243744-53243897
Coord A exon
chr19:53242331-53242440
Coord C2 exon
chr19:53242211-53242330
Length
110 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACC
5' ss Score
5.31
3' ss Seq
AATATATCTCATTCTTTTAGGTT
3' ss Score
10.3
Exon sequences
Seq C1 exon
GGACTGTTTACATTCAAGGATGTGGCCATAGAATTCTCTCAAGAGGAGTGGGAGTGCCTGGACCCTGCCCAGAGGGCCTTGTACAGGGACGTGATGTTGGAGAACTACAGGAACCTGCTTTCTCTCGATGAGGATAACATCCCTCCAGAAGATG
Seq A exon
GTTCTCACCTTGCAGCCTGTGGACAGAGCACACTGCCTCTTCCTTAGAATCCTACAAAATCCGACCCTTTTATTTTACTCCCGTACCTTTTATTTCTCTCCCTTTTCTAG
Seq C2 exon
CTTTCTACTCTATCCGGGAACTTAGGGAGACCTTAGTCTTCCTGATTCCATATTCTTCTAAGATTTGCCTCTGAAAGTTGCTTTTGAAATACACATTCCGGATGGGCGTGGTGCCTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197928-12-17,12-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.095
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=78.8)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTACATTCAAGGATGTGGCCA
R:
CGCCCATCCGGAATGTGTATT
Band lengths:
258-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains