HsaINT0188088 @ hg38
Intron Retention
Gene
ENSG00000197928 | ZNF677
Description
zinc finger protein 677 [Source:HGNC Symbol;Acc:HGNC:28730]
Coordinates
chr19:53235381-53243897:-
Coord C1 exon
chr19:53243744-53243897
Coord A exon
chr19:53238558-53243743
Coord C2 exon
chr19:53235381-53238557
Length
5186 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACC
5' ss Score
5.31
3' ss Seq
GTTTTTTTAATATCTTTCAGATA
3' ss Score
10.91
Exon sequences
Seq C1 exon
GGACTGTTTACATTCAAGGATGTGGCCATAGAATTCTCTCAAGAGGAGTGGGAGTGCCTGGACCCTGCCCAGAGGGCCTTGTACAGGGACGTGATGTTGGAGAACTACAGGAACCTGCTTTCTCTCGATGAGGATAACATCCCTCCAGAAGATG
Seq A exon
GTAACCACCCTTGTACATCTTTACATTTTTCCTTGTGAGTCTCTTGGGAGGCCCTGATGTGCTTGTCTGAATCCGATCCCTGTTCTAAAAGGGGAGATTGAAACTTTTTGATTGAGAGTGGAAAGGCTTCATAATGTAGCATATAGACTTTAAACTTCCCCTTTCTTCAGAAGTTCTGCGCATAATCAGGTTTGACGAGTGGTGGTTCCAGAATATCAGTACTTACAAAACCTTATGGAAAACGTTTTAAAGTGTCTGGTATCATGGTTTTATCCCTGTGCCTTTGATTCAGTAGTTTTTTCAGAGTCTGCATATTTAAAATAATCCCTAAGCATTCAGAAGAAGGCAGTCCGTTGACTAATTTATGAAATTGTTTTGGGAAATAGTTTTGCAGACCCATGTGTAATGTCCTCTCTTCGTAGCTGAACAAAGGGCTGGGAATGTATCCAGGAAAAGCACAGCATACCATGTTCCTTTTTTTCTTTATAAGTTGAAATCTTTCCTGAGCTGAATATTGTGTTCATTTTGGAGCACAGGAAAGAGTCCTAGACTATGGAAAGTGAAGTGAAAATAGGGAAAAAATCAGGTAGGTCGGAATGTGAGCACAAATAAGCGCTCAGATGGCCACAGAGTAAGCTACTCCATTGAGTATTGTTTGGGAAACTCTGCAAATGGGAAAGATCAGTGGGAAAACAAAAGTTTATTTCTTATGAGCTCTCAAAGCAAGGTCCACACCCGCTCCTACTGTCCCCCAACATACTGTTATTCAAATGTGTAAAAGGTTGAACTCCCACTCTCCCGTGATGCCCCAACTCATACAGACACAAAAGCAAAGGTGCTATCATGACCTACAATACTGTTTGGCCCCTCTGACCATTTTGGTCTCTTGGTTTTGAGAGGGACCGAAATGGCTGTTTTTAAGGACTCTCTTTTAGTGTATATAATTTCATCTGATGTGTGGTTTTCAGTCTATACAGATCAGAGCTGGGGCCTTTGTAGCCCTGGCTCCAGAACCTATTCAATTTCTATTCCTATTTCTTATACCTGCAAGAACTTTTCAGGAAAATGGGAAAACAGTGGCTCCCCCAAAATGTATCTGGGGTTCCCTGAAATTTGAAAGACTGTCGGTCTCTCTACTTGTTCAAGCCCCTTGGCCATTCCTTCAGTTCTGCTTTTGCCACATGTGTCTAAAGGGGAATGGGCAGGCTTTTGAGATTGTTACTCAGCATTAATGTAAAGACTTGACAGAGAGATCCTCTTTTTGATTGCCATTCCAAAATGGGAATATATCTCATTCTTTTAGGTTCTCACCTTGCAGCCTGTGGACAGAGCACACTGCCTCTTCCTTAGAATCCTACAAAATCCGACCCTTTTATTTTACTCCCGTACCTTTTATTTCTCTCCCTTTTCTAGCTTTCTACTCTATCCGGGAACTTAGGGAGACCTTAGTCTTCCTGATTCCATATTCTTCTAAGATTTGCCTCTGAAAGTTGCTTTTGAAATACACATTCCGGATGGGCGTGGTGCCTCACGCCTATAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACCTGAGGTCGGGAGTTCGAGACCAGCCTGACTAACATGGAAAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGTGTGTTGGCGCATGCCTGTAATACCAGCTGCTCGGGAGGCTGAGGCAGGAGAGTTGCTTGAACCCGAGAGGCAGAGGTTGTGGTGAGCCGAGATCACGCCATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCATCTCGAAAAAAAAAAAAAGAAAAAGAAAAGTACACATTCCTAGAGTCTGAAATTTCCTCTCTTTCTGCTGTGATAACCCACCAATAGGCGATGGACAACTTTTGGTGGACTCTCCCATGGAAGAGGTTTCCTTGGTGACAGAACATTCTTGAAAGAGAACATTAATTAATCTGTCACAGTATCATTCTGCTACATAGAGGTGCCTCTTGAAGCCACTGAGTAGAGTAGCCTGCATGTCCCAGTATGCTGAGAGAGAATCAGGACAGCCGGAGGGATAAGTGCTTCTGACCTTCTGGTTTCTGTGGAGTTTCCAGTGTCTCCCAAGGGCAGTGTGACAACGCTGGTTAGATATATGCTGATCATCCTCTTGGAGCCAGCAGTACAAGGTGTAGGAGTTTCTCCTGGGAAGAGCATTCTCCAAGTTCTCAACCTCATATCTGCGAACATGTTGACCAAACTGTTGCTCATACCACATTATTCATCCCATACGTGCAGTTGTACATTTTTCTTCAGTATGATTTTTATGCCTTTATTGAGGGAGCTTACAAAGTTGAATTAGGCATACATTTTTAAAGTTCAGTATAATTTGGTTAAGCCACTGACACTTTCATTTTGCCAATGTCATTGGTATAAATGAACTTGTATGTATTTAATCAGCAGTTACATGTTTTCATGATACTCTTAGTGTTTTTTGTTTTATATCTACAGTGTGTGGGGCCATGAGATGAATGAATATTGTTTTATTATATATATTTTTTTCTGCTTCATATACTTTCATGATGTTTTATATGTTTTACCAGAAGATTTCTTCCTTGAGTATTTATGTCTGAGTATTAGTTTCCTCAAAACATATATAACCTCCAAAACTTTGTTAAAGGATAGTATTAGTTATTCCTTTTACTTCTGTTTCCTGTAACTTTATATCAACTCTTAGCTTATACTTTTTAAAAATAGACTTTCTATTTTTTAGCAATTTTATGTTCACAGCAAACTAGATTTCCTGTATACTCTGTTCCCCCACACGTGCACAGCGTCTTCCCCCATTATCACCATCCCCCATCACAGTGGTACATTTGTTAAAATTGATAAACCTACATTGACACATCATTATCACCCAAAGTCCATAGTCGATGTTGGGGTTCACTCTATGTATATGCTTTGGGTTTGGGCAAATATATAATAGACATATATCCTCCATAATAGTATCTTACAGAATAATTACACTGCCCTAAAAAATCTGTGCTCTGTCTGTTCATCTCTCCCTCCCCCCAGCACCTGGCAACCACTGATCTCTTTACTGTCTCCATAGATTTGCCTTTTTCAGAATGTCATATAGTTGGAACCATATAGTATATGGCCTTTTCAGATTGGCTTCTTTCACTTAATAATATGCATTTCAATTTCTAGGGCTGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCCGGCGGATCACGAGGTCAGGAGATCAAGACGATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAGAAAATAAGCCGGGCGTGGTGGCGGGCACCTGTAGTTCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCAGAGGTTGTGATGAGCCGAGACCATGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCATCTCAAAAAATAGATAAATAAAATAAATTTCTTCCATGTCTTTTTATAGCTTGACAGCTCATTTCTTTTTAGCACAGAATAACATCCCTTCATTGCACACACTGTGTAAAGAATGACTCCTGCTTATACACAGGACAGCTTACTCAGGACAGCAACATGATCTGGTCACTGTCTAAACAACTTGTGCAAGATAAGGTGACTTAAATGCTATCTGAGAGCAGTGGTGCTGTCACACTATAGGTGACACAGCTCAGGTCCCATAATCTGCCTTGAAACATTTCTTCCTACACTCCTCGTATTTGCTGTGATTTATAATCCGTGCTGCCCTGGGTGGCCAGTGGTGCTTAATGCTGTGAACATGGCATCTTAGCCCGCACACACAGGTTCAGATTCTGGCTTTCAGATGTGCTTTCTCTGTGAGTTAGGGATAGATATGTAAACCTCTTCAGCCCTTTGTTTTGGTATGAAAAGGTGCGATAATTTACCTCAAGAGGATTTACATCAATTAGTGCTGTTAGAGACCTTAGTAACTTGCATAGCATTTAGTATGCTTTGAAAAGTTACCTTTATGAATAAGATATGTCAAGTGTCTGTCATGTTTCTTATGAGATTGACCTTTGCCTTCATTATATCTTACATATTTTCTTTTTTGTAATTTTTTTTTTCATATCAACATTTCTCTGACTCTACATAATAAAATGTTAAAGCACACAGCTTTCATTATATGTATTTTTTGGCCATAGAACTGGAAAACTAGATGACATTTCCTAGTCAGGGAGTTTCTCTATATACTGCTGTCATATAACTGCAGGCATGAAATTATTTCAGACTCCCCTCCTAATTCTTCATCTTTATAGTAATGTGCATTTACCTGAAGCTGATATTTCAAAATTTAGTGATTCTCAACATATTATTTTTCCTATTGTGTGTCCCTTCTGTTTTTTCTGTAGTTCATAAGCAGTAATTCTTTAGAATTTCACTGACAATTTTGTGTAATTGTGGTTGTTCATTAACTTGCCTGTTAGATTTTCACAGGTTACTAAAGTGTTTTATTTATTTTTGTAATGATTTACAGATGATGGTTTTTCAGTATATATTATGCAATAGAACCACCATGCACAAATTGTTAATGCTGCAAAATGCACATTCTACATGGGTGTAAGTAGTTTTATAACAAGTACTCACATTTGCAATTTGTAAATATTCAAAATTTTATTAAATTCTTCCGAATTTTTTCTTTCAGTGTTTTGTTTGCAATTATGAATTGTCATTTTTAAATATTTTTTATTAGATAAGCTTGAGCTGTGCCTTACCTTTTGTGTGTAATAATTATGTACTAAATAATGCATTACTATTTGTTTATCTTCAAATATGAGACTACCATATAGCTATGCCAATTTACGTGTTCCTTGGAGTGGTGGTGGAAAAATACCTCTTCTTTCAGAGTTTATGTGGATTTACATAGTATGAGTGTTTTAGCTATAGGGTGTTTTAAACTGTGCTTAAAATAATTTGTTACATGTTTTGTTACTGTGTTACTTTATTGAGGACAGCTAGTCCCTTTGTGTTGTTAAACGTTTAAAGACAGTTGAGAAGCTTCATAACTCTGTTCATTGTAAATCTTAGCTTTCTTGTAATATGTATTTTAATAAAATATTTACCTTGCAACTCTATTTGATGGAAAGCCTGTGGTTTTTTTAATATCTTTCAG
Seq C2 exon
ATATTTCTGTTGGATTTACAAGCAAGGGATTATCACCAAAGGAAAATAATAAAGAGGAATTATACCATCTGGTGATATTAGAAAGAAAGGAAAGCCATGGCATCAACAATTTTGACCTCAAGGAAGTCTGGGAAAATATGCCTAAGTTTGACAGCCTGTGGGACTATGATGTAAAAAATTACAAAGGAATGCCTTTGACCTGTAACAAAAATCTCACTCACAGAAAAGATCAACAACATAATAAATCCTCAATACATTTCTCTTTAAAGCAGAGTGTTTCTATAAGAGATAGTGCACACCAGTATTTCATCCATGACAAGCCATTTATAAGGAATTTGTTAAAACTGAAAAATAACATAAGGTATGCCGGAAACAAATACGTGAAGTGTTTTGAAAATAAAATTGGATTAAGCTTACAGGCACAGCTGGCTGAACTACAGAGATTTCAAACTGGGGAGAAAATGTATGAATGTAATCCAGTTGAGAAGTCTATCAATAGTTCCTCAGTTTCACCACTTCCTCCTTGTGTCAAAAACATTTGTAATAAATATAGGAAGATTTTGAAATACCCTTTATTACATACACAGTATGGGAGAACACACATTAGAGAAAAATCATACAAGTGTAATGACTGTGGAAAGGCTTTTAGCAAAAGTTCGAACCTCACTAATCATCAGAGAATTCACTCTGGACAGAGACCTTACAAATGTAACGAGTGTGGCAAAGCCTTTAACCAGTGTTCGAACCTCACTAGGCATCAGAGAGTCCATACAGGAGAGAAACCATATCAATGTAATATATGTGGCAAGGTCTGTAGTCAAAATTCAAATCTTGCAAGTCATCAGAGGATGCATACTGGAGAGAAACCTTACAAATGTAATGAATGTGGTAAGGCATTTATCCAGCGTTCACACCTTTGGGGTCATGAAAGAATTCATACTGGAGAGAAACCTTACAAATGTAATGAATGTGACAAAGCCTTTGCTGAACGTTCAAGCCTTACCCAACATAAGAGAATCCATACTGGAGAGAAGCCTTACATATGTAATGAGTGTGGCAAAGCTTTTAAGCAGTGCTCACATCTCACTAGGCATCAGAATATACATCCTGGAGAGAAACCACACAAATGTAATGTGTGTGGCAGGGCTTTTATCCAAAGTTCAAGTCTTGTGGAACATCAGAGAATTCACACTGGAGAAAAACCTTACAAATGTAATAAATGTGATAAAGCTTTTATCAAACGTTCACACCTTTGGGGTCATCAGAGAACTCATACTGGAGAGAAACCTTACAAATGTACTGAATGTGGCAAAGCCTTTACTGAACGTTCAAATCTTACTCAGCATAAGAAAATCCATACTGGAGAGAAACCTTACAAATGTACTGAATGTGGCAAAGCTTTTACCCAATTTGCAAACCTCACTAGACACCAGAAAATACACATTGAAAAGAAACATTGTAAACATAATATACATGGTAATGCTTTATTCCAAAGTTCAAACCTTGGAGATCATCAAAAAAGTTATAATAGAGAAAAACATATCAAATATAATGAGACAAAAATTAAGTATTCAAGCTGTACCTAGCATCAGGGGCTCCATTGTGAAAAGAAACCATATAAAACGAAAATGTGGTAAAGCCTTTAGCTATGGCTTATGTCTCACTTGATACCAGAATATACATCTTTGAGATAAACCACACAAAGATAACATGTATGGCAAGGCTTATCCAAAGTTCAAGCCTTGTGGAACATCATAGAATTCTTACTGTAGAGAAGCCTTACAAATATAATGAATGTGAACAGCTTTATAAAAATATTTACCCTATTATGGTTATAACAGAAGACATTCAGGATGGAAACCATACAAATGTGGCAAGTCCTTTAAGCAATGTTCTGACTTCAGGATACACCATTCATATTGGAGAGAAGCATTACAAGTGAAGGTGGTAAATTATTTTAAATTTCTCAATGGAAATTCATCCTTATATGCAAGCATTTTGTCATACAAAAATTCAGGCTAGAGGGAACTAAGTCTTTTTTCCTTCTTGAAGATTAAGTGATTGATGTTAAATTCACAGACAATTTTAAAAAGTCACAAACTCATGGTGTGTGTCAGAGGAGCAAGGACATCTGTGGAAAGATGTAACTTCAGTGTTAAAAATTTTTTATTCAGTTATTTCATATTTTTAAAAGTATGAAATCTGTTGCTGTTAAATCTTCATGGCATGCTTTTCATTTATCATGATTGTCTCAAGGAATGGATGTAAGATGGAAGGGACTACTTCCTTAGGTGTGGCTTCTTTATATTACTGAAACCTGGAAAAAGCAAGAACACTAATTTTTTCTTTTTTTGGAGACAGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACCATCTCAGCTCACTGCAACCTCTGTCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCACGAGTAGCTGGGATTACAGGCATGCGCCATCATGCCTGGCTAGTTTTTTGTTTTTTTGTTTTTGTATTTTTAGTAGAGACAGAGTTTCGCCATGTTGGCCAGGCTGATCTTGAACTCCTGACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGTGCCCAGCCAAGAACACTAATATACAATATACTATAAGAGCATGGGGGTTTGTGCCAGAAGAGAGGTAAAACTATTGTCTAACATATATGCTTTATGTGGTCAGGACCCCTTAGAATTGTTGATGTGACTGGGGACCTTTGTCGATTATAGGAGAGATTGGTTACAGTACAAGATGACCATGAAACAAGAAGAGTAGGGTGGGACATTGAGAGATTTTCATGGAAGTGAAATGGTCGGTTACTAGAGACTGCATATGTGGTAGAAAGAAATGGAGGGGGAATGATAGTCACCCTCTCTTGAAAGGTAGTTACTGTTGCATATCACAGATTATTGAACATAGATAGGTCTTATTTTTGGAAACTGAAGAGAGAATGGTTACCATAGAGGACAGTTCCATCAAAAGAACCAGAGTAGTGTTCTTATAGGGGATTCACATTTGGCCCCTGAGATTGCATTTGATACCATTTTATTTAGAATATATTATACTTCTTATGTCTTAATTAGTAAAATATAATCATTTTTAGTAACCCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197928:ENST00000598513:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.093
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=78.8)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9)
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains