HsaINT0188088 @ hg19
Intron Retention
Gene
ENSG00000197928 | ZNF677
Description
zinc finger protein 677 [Source:HGNC Symbol;Acc:28730]
Coordinates
chr19:53738638-53747150:-
Coord C1 exon
chr19:53746997-53747150
Coord A exon
chr19:53741811-53746996
Coord C2 exon
chr19:53738638-53741810
Length
5186 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACC
5' ss Score
5.31
3' ss Seq
GTTTTTTTAATATCTTTCAGATA
3' ss Score
10.91
Exon sequences
Seq C1 exon
GGACTGTTTACATTCAAGGATGTGGCCATAGAATTCTCTCAAGAGGAGTGGGAGTGCCTGGACCCTGCCCAGAGGGCCTTGTACAGGGACGTGATGTTGGAGAACTACAGGAACCTGCTTTCTCTCGATGAGGATAACATCCCTCCAGAAGATG
Seq A exon
GTAACCACCCTTGTACATCTTTACATTTTTCCTTGTGAGTCTCTTGGGAGGCCCTGATGTGCTTGTCTGAATCCGATCCCTGTTCTAAAAGGGGAGATTGAAACTTTTTGATTGAGAGTGGAAAGGCTTCATAATGTAGCATATAGACTTTAAACTTCCCCTTTCTTCAGAAGTTCTGCGCATAATCAGGTTTGACGAGTGGTGGTTCCAGAATATCAGTACTTACAAAACCTTATGGAAAACGTTTTAAAGTGTCTGGTATCATGGTTTTATCCCTGTGCCTTTGATTCAGTAGTTTTTTCAGAGTCTGCATATTTAAAATAATCCCTAAGCATTCAGAAGAAGGCAGTCCGTTGACTAATTTATGAAATTGTTTTGGGAAATAGTTTTGCAGACCCATGTGTAATGTCCTCTCTTCGTAGCTGAACAAAGGGCTGGGAATGTATCCAGGAAAAGCACAGCATACCATGTTCCTTTTTTTCTTTATAAGTTGAAATCTTTCCTGAGCTGAATATTGTGTTCATTTTGGAGCACAGGAAAGAGTCCTAGACTATGGAAAGTGAAGTGAAAATAGGGAAAAAATCAGGTAGGTCGGAATGTGAGCACAAATAAGCGCTCAGATGGCCACAGAGTAAGCTACTCCATTGAGTATTGTTTGGGAAACTCTGCAAATGGGAAAGATCAGTGGGAAAACAAAAGTTTATTTCTTATGAGCTCTCAAAGCAAGGTCCACACCCGCTCCTACTGTCCCCCAACATACTGTTATTCAAATGTGTAAAAGGTTGAACTCCCACTCTCCCGTGATGCCCCAACTCATACAGACACAAAAGCAAAGGTGCTATCATGACCTACAATACTGTTTGGCCCCTCTGACCATTTTGGTCTCTTGGTTTTGAGAGGGACCGAAATGGCTGTTTTTAAGGACTCTCTTTTAGTGTATATAATTTCATCTGATGTGTGGTTTTCAGTCTATACAGATCAGAGCTGGGGCCTTTGTAGCCCTGGCTCCAGAACCTATTCAATTTCTATTCCTATTTCTTATACCTGCAAGAACTTTTCAGGAAAATGGGAAAACAGTGGCTCCCCCAAAATGTATCTGGGGTTCCCTGAAATTTGAAAGACTGTCGGTCTCTCTACTTGTTCAAGCCCCTTGGCCATTCCTTCAGTTCTGCTTTTGCCACATGTGTCTAAAGGGGAATGGGCAGGCTTTTGAGATTGTTACTCAGCATTAATGTAAAGACTTGACAGAGAGATCCTCTTTTTGATTGCCATTCCAAAATGGGAATATATCTCATTCTTTTAGGTTCTCACCTTGCAGCCTGTGGACAGAGCACACTGCCTCTTCCTTAGAATCCTACAAAATCCGACCCTTTTATTTTACTCCCGTACCTTTTATTTCTCTCCCTTTTCTAGCTTTCTACTCTATCCGGGAACTTAGGGAGACCTTAGTCTTCCTGATTCCATATTCTTCTAAGATTTGCCTCTGAAAGTTGCTTTTGAAATACACATTCCGGATGGGCGTGGTGCCTCACGCCTATAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACCTGAGGTCGGGAGTTCGAGACCAGCCTGACTAACATGGAAAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGTGTGTTGGCGCATGCCTGTAATACCAGCTGCTCGGGAGGCTGAGGCAGGAGAGTTGCTTGAACCCGAGAGGCAGAGGTTGTGGTGAGCCGAGATCACGCCATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCATCTCGAAAAAAAAAAAAAGAAAAAGAAAAGTACACATTCCTAGAGTCTGAAATTTCCTCTCTTTCTGCTGTGATAACCCACCAATAGGCGATGGACAACTTTTGGTGGACTCTCCCATGGAAGAGGTTTCCTTGGTGACAGAACATTCTTGAAAGAGAACATTAATTAATCTGTCACAGTATCATTCTGCTACATAGAGGTGCCTCTTGAAGCCACTGAGTAGAGTAGCCTGCATGTCCCAGTATGCTGAGAGAGAATCAGGACAGCCGGAGGGATAAGTGCTTCTGACCTTCTGGTTTCTGTGGAGTTTCCAGTGTCTCCCAAGGGCAGTGTGACAACGCTGGTTAGATATATGCTGATCATCCTCTTGGAGCCAGCAGTACAAGGTGTAGGAGTTTCTCCTGGGAAGAGCATTCTCCAAGTTCTCAACCTCATATCTGCGAACATGTTGACCAAACTGTTGCTCATACCACATTATTCATCCCATACGTGCAGTTGTACATTTTTCTTCAGTATGATTTTTATGCCTTTATTGAGGGAGCTTACAAAGTTGAATTAGGCATACATTTTTAAAGTTCAGTATAATTTGGTTAAGCCACTGACACTTTCATTTTGCCAATGTCATTGGTATAAATGAACTTGTATGTATTTAATCAGCAGTTACATGTTTTCATGATACTCTTAGTGTTTTTTGTTTTATATCTACAGTGTGTGGGGCCATGAGATGAATGAATATTGTTTTATTATATATATTTTTTTCTGCTTCATATACTTTCATGATGTTTTATATGTTTTACCAGAAGATTTCTTCCTTGAGTATTTATGTCTGAGTATTAGTTTCCTCAAAACATATATAACCTCCAAAACTTTGTTAAAGGATAGTATTAGTTATTCCTTTTACTTCTGTTTCCTGTAACTTTATATCAACTCTTAGCTTATACTTTTTAAAAATAGACTTTCTATTTTTTAGCAATTTTATGTTCACAGCAAACTAGATTTCCTGTATACTCTGTTCCCCCACACGTGCACAGCGTCTTCCCCCATTATCACCATCCCCCATCACAGTGGTACATTTGTTAAAATTGATAAACCTACATTGACACATCATTATCACCCAAAGTCCATAGTCGATGTTGGGGTTCACTCTATGTATATGCTTTGGGTTTGGGCAAATATATAATAGACATATATCCTCCATAATAGTATCTTACAGAATAATTACACTGCCCTAAAAAATCTGTGCTCTGTCTGTTCATCTCTCCCTCCCCCCAGCACCTGGCAACCACTGATCTCTTTACTGTCTCCATAGATTTGCCTTTTTCAGAATGTCATATAGTTGGAACCATATAGTATATGGCCTTTTCAGATTGGCTTCTTTCACTTAATAATATGCATTTCAATTTCTAGGGCTGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCCGGCGGATCACGAGGTCAGGAGATCAAGACGATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAGAAAATAAGCCGGGCGTGGTGGCGGGCACCTGTAGTTCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCAGAGGTTGTGATGAGCCGAGACCATGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCATCTCAAAAAATAGATAAATAAAATAAATTTCTTCCATGTCTTTTTATAGCTTGACAGCTCATTTCTTTTTAGCACAGAATAACATCCCTTCATTGCACACACTGTGTAAAGAATGACTCCTGCTTATACACAGGACAGCTTACTCAGGACAGCAACATGATCTGGTCACTGTCTAAACAACTTGTGCAAGATAAGGTGACTTAAATGCTATCTGAGAGCAGTGGTGCTGTCACACTATAGGTGACACAGCTCAGGTCCCATAATCTGCCTTGAAACATTTCTTCCTACACTCCTCGTATTTGCTGTGATTTATAATCCGTGCTGCCCTGGGTGGCCAGTGGTGCTTAATGCTGTGAACATGGCATCTTAGCCCGCACACACAGGTTCAGATTCTGGCTTTCAGATGTGCTTTCTCTGTGAGTTAGGGATAGATATGTAAACCTCTTCAGCCCTTTGTTTTGGTATGAAAAGGTGCGATAATTTACCTCAAGAGGATTTACATCAATTAGTGCTGTTAGAGACCTTAGTAACTTGCATAGCATTTAGTATGCTTTGAAAAGTTACCTTTATGAATAAGATATGTCAAGTGTCTGTCATGTTTCTTATGAGATTGACCTTTGCCTTCATTATATCTTACATATTTTCTTTTTTGTAATTTTTTTTTTCATATCAACATTTCTCTGACTCTACATAATAAAATGTTAAAGCACACAGCTTTCATTATATGTATTTTTTGGCCATAGAACTGGAAAACTAGATGACATTTCCTAGTCAGGGAGTTTCTCTATATACTGCTGTCATATAACTGCAGGCATGAAATTATTTCAGACTCCCCTCCTAATTCTTCATCTTTATAGTAATGTGCATTTACCTGAAGCTGATATTTCAAAATTTAGTGATTCTCAACATATTATTTTTCCTATTGTGTGTCCCTTCTGTTTTTTCTGTAGTTCATAAGCAGTAATTCTTTAGAATTTCACTGACAATTTTGTGTAATTGTGGTTGTTCATTAACTTGCCTGTTAGATTTTCACAGGTTACTAAAGTGTTTTATTTATTTTTGTAATGATTTACAGATGATGGTTTTTCAGTATATATTATGCAATAGAACCACCATGCACAAATTGTTAATGCTGCAAAATGCACATTCTACATGGGTGTAAGTAGTTTTATAACAAGTACTCACATTTGCAATTTGTAAATATTCAAAATTTTATTAAATTCTTCCGAATTTTTTCTTTCAGTGTTTTGTTTGCAATTATGAATTGTCATTTTTAAATATTTTTTATTAGATAAGCTTGAGCTGTGCCTTACCTTTTGTGTGTAATAATTATGTACTAAATAATGCATTACTATTTGTTTATCTTCAAATATGAGACTACCATATAGCTATGCCAATTTACGTGTTCCTTGGAGTGGTGGTGGAAAAATACCTCTTCTTTCAGAGTTTATGTGGATTTACATAGTATGAGTGTTTTAGCTATAGGGTGTTTTAAACTGTGCTTAAAATAATTTGTTACATGTTTTGTTACTGTGTTACTTTATTGAGGACAGCTAGTCCCTTTGTGTTGTTAAACGTTTAAAGACAGTTGAGAAGCTTCATAACTCTGTTCATTGTAAATCTTAGCTTTCTTGTAATATGTATTTTAATAAAATATTTACCTTGCAACTCTATTTGATGGAAAGCCTGTGGTTTTTTTAATATCTTTCAG
Seq C2 exon
ATATTTCTGTTGGATTTACAAGCAAGGGATTATCACCAAAGGAAAATAATAAAGAGGAATTATACCATCTGGTGATATTAGAAAGAAAGGAAAGCCATGGCATCAACAATTTTGACCTCAAGGAAGTCTGGGAAAATATGCCTAAGTTTGACAGCCTGTGGGACTATGATGTAAAAAATTACAAAGGAATGCCTTTGACCTGTAACAAAAATCTCACTCACAGAAAAGATCAACAACATAATAAATCCTCAATACATTTCTCTTTAAAGCAGAGTGTTTCTATAAGAGATAGTGCACACCAGTATTTCATCCATGACAAGCCATTTATAAGGAATTTGTTAAAACTGAAAAATAACATAAGGTATGCCGGAAACAAATACGTGAAGTGTTTTGAAAATAAAATTGGATTAAGCTTACAGGCACAGCTGGCTGAACTACAGAGATTTCAAACTGGGGAGAAAATGTATGAATGTAATCCAGTTGAGAAGTCTATCAATAGTTCCTCAGTTTCACCACTTCCTCCTTGTGTCAAAAACATTTGTAATAAATATAGGAAGATTTTGAAATACCCTTTATTACATACACAGTATGGGAGAACACACATTAGAGAAAAATCATACAAGTGTAATGACTGTGGAAAGGCTTTTAGCAAAAGTTCGAACCTCACTAATCATCAGAGAATTCACTCTGGACAGAGACCTTACAAATGTAACGAGTGTGGCAAAGCCTTTAACCAGTGTTCGAACCTCACTAGGCATCAGAGAGTCCATACAGGAGAGAAACCATATCAATGTAATATATGTGGCAAGGTCTGTAGTCAAAATTCAAATCTTGCAAGTCATCAGAGGATGCATACTGGAGAGAAACCTTACAAATGTAATGAATGTGGTAAGGCATTTATCCAGCGTTCACACCTTTGGGGTCATGAAAGAATTCATACTGGAGAGAAACCTTACAAATGTAATGAATGTGACAAAGCCTTTGCTGAACGTTCAAGCCTTACCCAACATAAGAGAATCCATACTGGAGAGAAGCCTTACATATGTAATGAGTGTGGCAAAGCTTTTAAGCAGTGCTCACATCTCACTAGGCATCAGAATATACATCCTGGAGAGAAACCACACAAATGTAATGTGTGTGGCAGGGCTTTTATCCAAAGTTCAAGTCTTGTGGAACATCAGAGAATTCACACTGGAGAAAAACCTTACAAATGTAATAAATGTGATAAAGCTTTTATCAAACGTTCACACCTTTGGGGTCATCAGAGAACTCATACTGGAGAGAAACCTTACAAATGTACTGAATGTGGCAAAGCCTTTACTGAACGTTCAAATCTTACTCAGCATAAGAAAATCCATACTGGAGAGAAACCTTACAAATGTACTGAATGTGGCAAAGCTTTTACCCAATTTGCAAACCTCACTAGACACCAGAAAATACACATTGAAAAGAAACATTGTAAACATAATATACATGGTAATGCTTTATTCCAAAGTTCAAACCTTGGAGATCATCAAAAAAGTTATAATAGAGAAAAACATATCAAATATAATGAGACAAAAATTAAGTATTCAAGCTGTACCTAGCATCAGGGGCTCCATTGTGAAAAGAAACCATATAAAACGAAAATGTGGTAAAGCCTTTAGCTATGGCTTATGTCTCACTTGATACCAGAATATACATCTTTGAGATAAACCACACAAAGATAACATGTATGGCAAGGCTTATCCAAAGTTCAAGCCTTGTGGAACATCATAGAATTCTTACTGTAGAGAAGCCTTACAAATATAATGAATGTGAACAGCTTTATAAAAATATTTACCCTATTATGGTTATAACAGAAGACATTCAGGATGGAAACCATACAAATGTGGCAAGTCCTTTAAGCAATGTTCTGACTTCAGGATACACCATTCATATTGGAGAGAAGCATTACAAGTGAAGGTGGTAAATTATTTTAAATTTCTCAATGGAAATTCATCCTTATATGCAAGCATTTTGTCATACAAAAATTCAGGCTAGAGGGAACTAAGTCTTTTTTCCTTCTTGAAGATTAAGTGATTGATGTTAAATTCACAGACAATTTTAAAAAGTCACAAACTCATGGTGTGTGTCAGAGGAGCAAGGACATCTGTGGAAAGATGTAACTTCAGTGTTAAAAATTTTTTATTCAGTTATTTCATATTTTTAAAAGTATGAAATCTGTTGCTGTTAAATCTTCATGGCATGCTTTTCATTTATCATGATTGTCTCAAGGAATGGATGTAAGATGGAAGGGACTACTTCCTTAGGTGTGGCTTCTTTATATTACTGAAACCTGGAAAAAGCAAGAACACTAATTTTTTCTTTTTTTGGAGACAGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACCATCTCAGCTCACTGCAACCTCTGTCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCACGAGTAGCTGGGATTACAGGCATGCGCCATCATGCCTGGCTAGTTTTTTGTTTTTTTGTTTTTGTATTTTTAGTAGAGACAGAGTTTCGCCATGTTGGCCAGGCTGATCTTGAACTCCTGACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGTGCCCAGCCAAGAACACTAATATACAATATACTATAAGAGCATGGGGGTTTGTGCCAGAAGAGAGGTAAAACTATTGTCTAACATATATGCTTTATGTGGTCAGGACCCCTTAGAATTGTTGATGTGACTGGGGACCTTTGTCGATTATAGGAGAGATTGGTTACAGTACAAGATGACCATGAAACAAGAAGAGTAGGGTGGGACATTGAGAGATTTTCATGGAAGTGAAATGGTCGGTTACTAGAGACTGCATATGTGGTAGAAAGAAATGGAGGGGGAATGATAGTCACCCTCTCTTGAAAGGTAGTTACTGTTGCATATCACAGATTATTGAACATAGATAGGTCTTATTTTTGGAAACTGAAGAGAGAATGGTTACCATAGAGGACAGTTCCATCAAAAGAACCAGAGTAGTGTTCTTATAGGGGATTCACATTTGGCCCCTGAGATTGCATTTGATACCATTTTATTTAGAATATATTATACTTCTTATGTCTTAATTAGTAAAATATAATCATTTTTAGTAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197928-ZNF677:NM_182609:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.089
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=78.8)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9)
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)