HsaALTA1054705-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000198218 | QRICH1
Description
glutamine rich 1 [Source:HGNC Symbol;Acc:HGNC:24713]
Coordinates
chr3:49092397-49094363:-
Coord C1 exon
chr3:49093912-49094363
Coord A exon
chr3:49092449-49092456
Coord C2 exon
chr3:49092397-49092448
Length
8 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
TTTTGTTCTATCTTCTTCAGAAT
3' ss Score
10.36
Exon sequences
Seq C1 exon
AAAGGAGGCTCTGGCGGGCGACGGAAGGTGGGTCCAAAGAGCTAGCTTGGAGCCCTAGCCTTCCGAGACTCCACTACTAGGCCAAGCCACGGCCCTAGCTCCGCCCCACATGGAGAGGCGTCCATGGGCGGAGCGAGCCGCTCCATACCCTAGGATCCACTATCCGCTCTAGCGGCCAGAAGCGCGGCCACCTTCCCCTGCTGAAGCGTTCACTTTAATTTTGGCCGGTAGGCAGTCCCAGATCTCGCGGGATCCGACGCCCCGATTATCGCGAGAGGAGCAATCGGCTCCTATTGGCTGTGAGGGTTGAATGTAAGATGGCGCCCAGGGAGCTGTGAGGAGAAAACCCTGTCGGTCTTGGAGCGACGACGGCAGAACCAGGGTCCCTGGCGGTGCGGCGGGGCCGGCGGGTGCAGCGGAGGCGGCGGCGGCGGCGGCAGTGACGTCGCCGG
Seq A exon
AATATTAG
Seq C2 exon
AAGTCTTAAGAACTCAGGACAAGCAGCAGAAATACATGCAACATGGTGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198218-2-6,2-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGAACCAGGGTCCCT
R:
TGCTTGTCCTGAGTTCTTAAGACT
Band lengths:
107-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains