RnoALTA0032062-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000025071 | Qrich1
Description
glutamine-rich 1 [Source:RGD Symbol;Acc:1311095]
Coordinates
chr8:117307339-117308527:+
Coord C1 exon
chr8:117307339-117307688
Coord A exon
NA
Coord C2 exon
chr8:117308468-117308527
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTGGGT
5' ss Score
3.82
3' ss Seq
CTTTGTTCTATCTTCTTCAGAAT
3' ss Score
10.32
Exon sequences
Seq C1 exon
AGCTGTGGCCCGTGGGCTAGAACGGCTTCCGGGGCGCGCGCTTCCCCGCGACCCCCAGTTTTGTGGCGCGCGCCCTGCTGTTGGTTTGGTTGCTCGCGCTGTCCGGAGTACGCGCAGGACGCCCCTTCCGAGAGGAGGGTCGGCGGCCTGGCTGACGACCGGCTTGCTGAGTGGGGAAGGTTGAGGGTTGGGCCCTTGCCCTCGTGACGTCCCGGGCAGCGGTGGCCTAGGTCTGCGGAGAAACATAGCGGCTTTGCGGTCTGGCTTGCGGCTCCGCTCCTCCGTGAGGCGGACAGGATTGCTTGTACTAACCGAAGAATGCTGTTACTTAAGCGAGGCCCATGTACTGG
Seq A exon
NA
Seq C2 exon
AATGTTAGAAGTCTTAAGAACTCAGGACAAGCAGCAGACATACATGCAACATGGTGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025071-6-1,6-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACATAGCGGCTTTGCGGTC
R:
CTGCTGCTTGTCCTGAGTTCT
Band lengths:
147-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]