HsaALTA1054744-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000198265 | HELZ
Description
helicase with zinc finger [Source:HGNC Symbol;Acc:HGNC:16878]
Coordinates
chr17:67160275-67161076:-
Coord C1 exon
chr17:67160897-67161076
Coord A exon
chr17:67160336-67160362
Coord C2 exon
chr17:67160275-67160335
Length
27 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
3' ss Seq
TGCACCATTTATTTCAGCAGGAT
3' ss Score
5.8
Exon sequences
Seq C1 exon
ACAATGGGATGAACAGTTGGATCCTCGACTAAATGCAAAACAGAAAGAGGCTGTTCTGGCCATTACCACTCCACTTGCAATCCAGCTGCCGCCTGTGCTTATCATCGGACCCTATGGGACAGGCAAAACGTTCACTCTAGCTCAGGCTGTCAAACATATTCTGCAGCAACAGGAGACTAG
Seq A exon
GATTCTCATTTGCACCCATTCTAATAG
Seq C2 exon
TGCTGCTGATCTCTACATAAAGGATTATTTACATCCATATGTAGAAGCAGGCAATCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198265-60-54,60-53,60-52-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PU(42.5=83.6)
A:
NA
C2:
PF130861=AAA_11=FE(28.3=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACAGGCAAAACGTTCACT
R:
CTGGGGATTGCCTGCTTCTAC
Band lengths:
126-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains