RnoALTA0017952-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000003213 | Helz
Description
helicase with zinc finger [Source:RGD Symbol;Acc:1307049]
Coordinates
chr10:95847283-95848200:+
Coord C1 exon
chr10:95847283-95847462
Coord A exon
chr10:95848113-95848139
Coord C2 exon
chr10:95848140-95848200
Length
27 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TGCACCATTTATTTCAGCAGGAT
3' ss Score
5.8
Exon sequences
Seq C1 exon
ACAGTGGGATGAGCAGTTGGATCCTCGACTAAATGCAAAGCAGAAAGAAGCTGTGCTGGCCATCACCACTCCGCTCTGCATCCAGCTGCCCCCCGTTCTTATCATTGGACCCTACGGGACGGGTAAAACCTTCACTCTGGCTCAGGCCGTCAAGCACATACTGCAGCAGCAGGAGACGAG
Seq A exon
GATTCTCATTTGCACCCATTCTAATAG
Seq C2 exon
TGCTGCTGACCTCTACATAAAGGATTATTTACATCCCTATGTAGAAGCAGGCAATGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003213-22-31,22-30,22-29-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PU(26.3=83.6)
A:
NA
C2:
PF130861=AAA_11=FE(18.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACGGGTAAAACCTTCACT
R:
TGCCTGCTTCTACATAGGGATG
Band lengths:
118-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]