HsaALTA1055483-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000198917 | SPOUT1
Description
SPOUT domain containing methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr9:128824977-128826152:-
Coord C1 exon
chr9:128826022-128826152
Coord A exon
NA
Coord C2 exon
chr9:128824977-128825049
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
TTCTTCTGGCTTCTCCCCAGGAG
3' ss Score
9.47
Exon sequences
Seq C1 exon
GGCTCCTGAACCCCCTGGACAGCCCCCACCACATGCGTCAGGATGAGGAATCCGAGTTCCGAGAGGGCATCGTGGTGGATCGGCCCACCCGGCCAGGCCACGGCTCCTTTGTCAACTGTGGCATGAAAAAG
Seq A exon
NA
Seq C2 exon
GAGGTGAAGATTGACAAGAACCTGGAGCCCGGGCTTCGGGTGACTGTGCGACTGAACCAGCAGCAGCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198917-9-17,9-16,9-15-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.432 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(14.7=100)
A:
NA
C2:
PF0259812=Methyltrn_RNA_3=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACCACATGCGTCAGGAT
R:
CTGGTTCAGTCGCACAGTCAC
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains