RnoALTA0038396-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000025711 | Spout1
Description
SPOUT domain containing methyltransferase 1 [Source:RGD Symbol;Acc:1563514]
Coordinates
chr3:8746432-8747515:-
Coord C1 exon
chr3:8747385-8747515
Coord A exon
NA
Coord C2 exon
chr3:8746432-8746504
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
TTGTGCTAGCTTCTCTTCAGGAA
3' ss Score
4.88
Exon sequences
Seq C1 exon
GAATCCTCAACCCGTTGGACAGCCCTCACCACATGCGTCAGGATGAAGAATCTGAGTTCAGAGAAGGCGTCGTGGTGGACCGGCCCACCAAGGCTGGCCACGGCTCTTTGGTCAACTGTGGAATGAAGAAG
Seq A exon
NA
Seq C2 exon
GAAGTGAAGATTGATAAGAAACTGGACCCTGGACTTCGGGTGACCGTGCGGCTGAACCAGCAGCAGCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025711-9-11,9-10-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.409 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(14.7=100)
A:
NA
C2:
PF0259812=Methyltrn_RNA_3=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGCGTCGTGGTGGA
R:
CGAAGTCCAGGGTCCAGTTTC
Band lengths:
108-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]