HsaALTA1055951-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000204469 | PRRC2A
Description
proline rich coiled-coil 2A [Source:HGNC Symbol;Acc:HGNC:13918]
Coordinates
chr6:31635582-31636049:+
Coord C1 exon
chr6:31635582-31635749
Coord A exon
chr6:31635967-31636007
Coord C2 exon
chr6:31636008-31636049
Length
41 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
ACCGTGCTCCTCTCCTGCAGATC
3' ss Score
13.16
Exon sequences
Seq C1 exon
GCCATTCCTGTATCACGAGACTGGGAGCTGCTTCCCAGTGCTGCTGCCTCTGCTGAGCCACAATCCAAGAACCTGGATTCTGGGCACTGTGTCCCGGAGCCCAGCTCCTCAGGCCAGCGCCTGTATCCTGAGGTTTTCTATGGCAGTGCTGGGCCTTCCAGTTCTCAG
Seq A exon
ATCTCTGGGGGAGCCATGGACTCTCAATTACATCCAAACAG
Seq C2 exon
TGGAGGCTTCCGCCCTGGGACACCCTCACTGCACCCTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204469-50-59,50-58,50-57-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.821 A=NA C2=0.964
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGAACCTGGATTCTGGGC
R:
TAAGGGTGCAGTGAGGGTGTC
Band lengths:
143-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains