HsaALTA1055961-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000204514 | ZNF814
Description
zinc finger protein 814 [Source:HGNC Symbol;Acc:HGNC:33258]
Coordinates
chr19:57864765-57868579:-
Coord C1 exon
chr19:57868458-57868579
Coord A exon
NA
Coord C2 exon
chr19:57864765-57864919
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
TTTTGTTTTTTTTGAGGCAGGAT
3' ss Score
3.55
Exon sequences
Seq C1 exon
GGATGACATTTCTCCATGTTTGTCAGGCCTTGGACTCTCTACGTCAGGTGATCCATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCGCCTGACCCTTGCAG
Seq A exon
NA
Seq C2 exon
GATCTCACTCTATTCCCCAGGCTAGAGTGCGATGGCACCATCTCGGCTGATTGCAACCTCCATTTTCCAGGAAGGCTCTTTAATTCCCCCTGATTACAAAGGTTTTGTGTGAACATAATTTGGTGTAATAAAAAAAAATTTACACCACAAGAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204514-20-27,20-26-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGATTACAGGTGTGAGC
R:
AGGTTGCAATCAGCCGAGATG
Band lengths:
101-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains