HsaALTA1062468-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000269867 | CTD-2583A14.8
Description
NA
Coordinates
chr19:57867038-57868172:-
Coord C1 exon
chr19:57867851-57868172
Coord A exon
chr19:57867395-57867448
Coord C2 exon
chr19:57867038-57867394
Length
54 bp
Sequences
Splice sites
5' ss Seq
CAGGCTGGA
5' ss Score
-2.16
3' ss Seq
CTTGAACCCAGGAGACGGAGGTT
3' ss Score
-28.01
Exon sequences
Seq C1 exon
GCCAGCTGCTTCATGGATGGTGTCCATTTGATAAGGCTTTCAGGGTAGGCAGAAATTCTTTTGTCACCAGGCATCATGAGGGTCATCAGCTCCTGCTGTAGCCTTTTGGCTACAGGGCCCCAGGCAGTGCCCCTGCTGGGCTCAGCTCCTTTATGGGCGGTGGCGACACTAACAGTGGCTGGGTCAAAGTTTTGTGAGGCTATCTGGGTGGCACTGGCAGAGAGACAAGAACTCAGAAAATGTGACTGCATCTGTGATCATCATGTTTATTTTTTATTTTTATTTATTTATTTTGAGACGGAGTCTTGCTCTTGTCACCCAG
Seq A exon
GTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCGACAAAGTGAG
Seq C2 exon
GCTCCATCTCAAAAAAAAAAAAAAAAGGAAATAGTTTTAAGTTCTCCCATCCAAGTAGTAACCAGGCCCGACCCTGCTTAGCTTCCGAGATCAGACGAGATCAGGCGCGTTCAGGGTGGTATGGCCATAGACGGAAATAGTTTTAAGTTCTCAATCAACTTCAACTGAATGGTTAGTGGTCAGTTTTGTAATCACAATGACATTCTTGCAAACAAATACAATGTGTGGCATCTCTCTTTGATATACTGGATAGTTAAAAATTGTTTTAAAGTTTTGCCTAATATTTTGCGATTTATCTCAATGTAATCTGTATAAGTAGTAAAATTATAGATGACTCCTTTCCTTTTTTTTTTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000269867-7-2,7-1,7-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGTCTTGCTCTTGTCACC
R:
GCGCCTGATCTCGTCTGATCT
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains