HsaALTA1056415-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000205744 | DENND1C
Description
DENN domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr19:6477218-6477458:-
Coord C1 exon
chr19:6477378-6477458
Coord A exon
chr19:6477279-6477283
Coord C2 exon
chr19:6477218-6477278
Length
5 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GAGTCGTGCCTCTTCCCCAGGGC
3' ss Score
7.47
Exon sequences
Seq C1 exon
GTCACCGAGGCAGAGGAACTTCTTCAAAATCTGTTTCAGCAGTCCCTGTCTGGGCCCCAGGCCTCAGTGGGGCTTGAGCTG
Seq A exon
GGCAG
Seq C2 exon
CGGAGTGACGGTCTCCAGCGGGCAGGGTATCCCCCCCCCTACCCGGGGGAATAGCAAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205744-10-25,10-24,10-23-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.418
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(12.7=100)
A:
NA
C2:
PF0214116=DENN=PD(20.8=72.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCAGCAGTCCCTGTCTGG
R:
CTTGCTATTCCCCCGGGTAGG
Band lengths:
107-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains