RnoALTA0011623-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000046050 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr9:9974299-9974535:+
Coord C1 exon
chr9:9974299-9974379
Coord A exon
chr9:9974484-9974488
Coord C2 exon
chr9:9974489-9974535
Length
5 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
CAGTTACTCCTATGCCCCAGGAC
3' ss Score
5
Exon sequences
Seq C1 exon
GTCACCGAGGCTGAAGAACTCCTACAGAACTTGCAGCAACACCCCTATCTTGGACCCGGTTTTTCAGGGGGACCAAAGACG
Seq A exon
GACAG
Seq C2 exon
CAGCATCACCAGCTGGAGCGAGTGCGGGATCTTGCCTCCTGCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046050-9-14,9-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(12.8=100)
A:
NA
C2:
PF0214116=DENN=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCGAGGCTGAAGAACTC
R:
ACTCGCTCCAGCTGGTGAT
Band lengths:
104-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]