HsaALTA1057552-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000225032 | RP11-228B15.4
Description
NA
Coordinates
chr9:127818600-127819592:+
Coord C1 exon
chr9:127818600-127818711
Coord A exon
chr9:127819121-127819123
Coord C2 exon
chr9:127819124-127819592
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
CTAATTTTTTGTATTTTTAGTAG
3' ss Score
5.2
Exon sequences
Seq C1 exon
GCTGTCTCCCTCCTGACTCTGGGAGTCTCATCTCCTCTGGAGTCATGGTGGGAAGAAAGGCGGAGAGGAAGTTCCAGGAGCTGGGAGGCCCGAGGGGTGACAGGCATGCCAG
Seq A exon
TAG
Seq C2 exon
ATACGGGGTTTCACCATGTTAGCCAGGATGGTCTCAATCTCTTCACCTCGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGCGATTACAGGCGTGAGCCACTGCGCCCGGCCCTTTTTTTTTTTTTTAAACTAATATTTATCAAGGAGGCACCAGCTGCCAGGCTGTGTGAAGAGCTTCCACACAGCACCTCATTGGCTGCCCAGAAGCACCCTGTGGCGCAGAGTCCTTTCTTAGGCCACCTTTGGGCCCAGAAAACTAAAGTGACTTGCCCAAGGCCACACAGCCAGTATGTGCTAAGCCCTCTGACTTGAGAGACCAAGAGCGTCACCCTCAGCAGTCCTGCTCCGGTCATACAGAAGGGGAGACCGAGGCATTCCAGACACACATGGCTTGCCAGGAGTTTCCCGAGGCCTGCTCCCTCCCAGGCCAGGAAGAGGCCCCGGCCCAGCAGCAGCCCCTGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000225032-7-7,7-6,7-5-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGGAGTCATGGTGGGAA
R:
GCTAACATGGTGAAACCCCGT
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains