HsaINT0056232 @ hg38
Intron Retention
Gene
ENSG00000106991 | ENG
Description
endoglin [Source:HGNC Symbol;Acc:HGNC:3349]
Coordinates
chr9:127818716-127819660:-
Coord C1 exon
chr9:127819622-127819660
Coord A exon
chr9:127818833-127819621
Coord C2 exon
chr9:127818716-127818832
Length
789 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
3' ss Seq
TCCCTCCCGTCCTCCCCCAGAAA
3' ss Score
11.09
Exon sequences
Seq C1 exon
GCGGTGGTCAATATCCTGTCGAGCTCATCACCACAGCGG
Seq A exon
GTGAGATGGACAGTCACGTGCTAACCCACCTGGCCCAGGGGCTGCTGCTGGGCCGGGGCCTCTTCCTGGCCTGGGAGGGAGCAGGCCTCGGGAAACTCCTGGCAAGCCATGTGTGTCTGGAATGCCTCGGTCTCCCCTTCTGTATGACCGGAGCAGGACTGCTGAGGGTGACGCTCTTGGTCTCTCAAGTCAGAGGGCTTAGCACATACTGGCTGTGTGGCCTTGGGCAAGTCACTTTAGTTTTCTGGGCCCAAAGGTGGCCTAAGAAAGGACTCTGCGCCACAGGGTGCTTCTGGGCAGCCAATGAGGTGCTGTGTGGAAGCTCTTCACACAGCCTGGCAGCTGGTGCCTCCTTGATAAATATTAGTTTAAAAAAAAAAAAAAGGGCCGGGCGCAGTGGCTCACGCCTGTAATCGCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTGAAGAGATTGAGACCATCCTGGCTAACATGGTGAAACCCCGTATCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGTAGGAGAATGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAGAGAGTCAGGCAACTCCACAGGGCCATGATGCCTGTTCCTCCCCACACCCCTCGCCCTCCTGGCTGGCGCCGCCAGATTGACCAAGTCTCCCTCCCGTCCTCCCCCAG
Seq C2 exon
AAAAAGGTGCACTGCCTCAACATGGACAGCCTCTCTTTCCAGCTGGGCCTCTACCTCAGCCCACACTTCCTCCAGGCCTCCAACACCATCGAGCCGGGGCAGCAGAGCTTTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106991:ENST00000344849:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(14.5=100),PF0010018=Zona_pellucida=PU(8.4=92.3)
A:
NA
C2:
PF0010018=Zona_pellucida=PD(8.3=17.9),PF0010018=Zona_pellucida=FE(26.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development