HsaALTA1057870-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000227200 | RP11-121A14.3
Description
NA
Coordinates
chr9:124262876-124270086:+
Coord C1 exon
chr9:124262876-124263018
Coord A exon
NA
Coord C2 exon
chr9:124269986-124270086
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AAGGTGTTCCCCTTTTATAGAGG
3' ss Score
6.2
Exon sequences
Seq C1 exon
GTGCCTGCATTTTCCCCGAATTGTTTAACCCTCATGCTTCAGAATTAGGCTGAGGCTTGCGGGGTGGGTCATGTTGACCTGGGTGAACAGAGATCCCTTTAAGAAGAACTTCTCCATGTTCCAGAGGCGCGTTCTTACTGCAG
Seq A exon
NA
Seq C2 exon
AGGAGTCTCCTAGAGCCAACCGCAGCATCCCTGCCTTTGGGAGCCACCTGGAATGTGCCAGCTGCAGTAGCCGTTCCTTCCACGCCCCCCCCCCATGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000227200-0-4,0-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGCATTTTCCCCGAATT
R:
GATGCTGCGGTTGGCTCTAG
Band lengths:
171-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains