HsaALTA1058402-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000231419 | LINC00689
Description
long intergenic non-protein coding RNA 689 [Source:HGNC Symbol;Acc:HGNC:27217]
Coordinates
chr7:159016458-159020848:+
Coord C1 exon
chr7:159016458-159017646
Coord A exon
NA
Coord C2 exon
chr7:159020485-159020848
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGA
5' ss Score
7
3' ss Seq
ACCTTCTTTCATTATGCAAGGGG
3' ss Score
4.13
Exon sequences
Seq C1 exon
CTTCCCTTCCATCACTGCAGACCTCAGAGTGGACGTCCAGTCTCCTGTGCGGGATGAGATACACTCCTTCCCTTCCATCGCTGCAGACCTCAGAGTGGACGTCCAGTCTCTCTGTGCGGGCCAAGTGTACACAGTTTTGTTCCGTCACAACTTCCACGACAGGCCAGTGTGAGGTTTTTGAGCTGGTGCTGACTGAAAACTGTCAGCTGCCCAAGGACCTGGGAGCTCTGCTCCCCACTCCTGGTGTGCGGTCTTGCGCCTGGCCTCCCTGCCTAGGTTACATGCAGTGGTCATCCCGGTCGCTCCCACACCCGTGTGGGCTCTGGGATCCCCTCTTCCAGCCAGCCCAGGGGACATCTGGCTGTCTCAGGACCCAGCCATCTGTAAAAATTAGGCAGGTCCCTTCAGTATGCTCCTGGTCAACAAAGAAAAACTTCAATTTTGAGAATGGCATCTGTATTCCGAAGTGTTCTCTCAGATGTTTGAGTTCCACTAAGTAG
Seq A exon
NA
Seq C2 exon
GGGAAGAAGATGCTGCATACAGGATGGAATATCCAGGGGAAGACGTCTAAGGAGAGATGCCCAGCTGGGAGTCCTATGCAAGGGGAAGAAGATGCTGCATACAGGATGGGATATCCAGGGGAAGATTTCTAAGAAGAGATGCCCAGCTGGGAGTCCTATGCAAGGGGAAGAAGATGCTGCATACAGGATGGGATATCCAGGGGAAGATTTCTAAGGAGAGACACCCGGCTGGAAGTCAAGATATGTCAGTTGTTTCCATTATAATAAAACCACTCATGTTAGATGAGCTGAACTTTCCCTTTTCCCCAGTTCTTACGATCAAAAAGTGGCTGTCCTAAATTTCATCACTCAATATCCTTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000231419-9-7,9-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGGATCCCCTCTTCCAG
R:
CCAGCTGGGCATCTCTCCTTA
Band lengths:
248-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains