HsaEX0000843 @ hg38
Exon Skipping
Gene
ENSG00000231419 | LINC00689
Description
long intergenic non-protein coding RNA 689 [Source:HGNC Symbol;Acc:HGNC:27217]
Coordinates
chr7:159008354-159020848:+
Coord C1 exon
chr7:159008354-159009438
Coord A exon
chr7:159016458-159017646
Coord C2 exon
chr7:159020485-159020848
Length
1189 bp
Sequences
Splice sites
3' ss Seq
GAGATCTCCCACCCTTTTAGGTC
3' ss Score
9.09
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
AGGAAAATGATGAAGTCCCAAAAGACCAGAAATATATTTCAGAAGATGCCAGTTACTACTTTAAATGTCAAACCAACATTTCAGAAATAACTTTCAATGATTATTTCCTGCCAAGAAGGTGAACGCTGGAGACCTTAATGGTGGAAGATGGAGGGCGTCTTTCCTTCTGTTAAGCTGACAACTTGGCTTCCATCTTGTGAGGACCTCACCCTACCTGGTGGCAGAGGACGTCTGACGCCCTCAATCATTGCCGTTACACTTCCCAGCCTGGTGGTCAGTCTCCTGGGGTCTGTGTGTTAACAAACCATCGACTGGACAATCGCAGTTTTCCTTATGAAGGCTTACTTTAAAAAGGCTCTGGATTTTCAGAAGCGAAGTCGCTTTCATCCCCGATTCAGACCCATCCTAGTGGAGGAAAAATCCTACCAGAAGAAGGGCTGACCATAGGAACTTGCCATTTCCTTGACCCCATCATATCTGAGGAAAAAACAACAGAAAAG
Seq A exon
GTCAAAACCCACGTGTACGCCCAACGTCCTGATTGACGACTTTGCCTGCAGCTTCTGCTTTCCTGAAATTCGCTGCTGCCTTTAGAACCCTTGTCTGCAGCCAGTGGGGAGTTCAGGACTTAGGCGGAGCTGCCCCACCCTCCTGCTTGGCACCCTGCAAATACATGCCCTCCCTTCCATCGCTGCAGACCTCAGAGTGGGCGTCCGGTCTCCTGTGCGGGATGAGAATACACACCCTCCCTTCCATCGCTGCAGACCTTAGAGTGGATGTCCGGTCTCCTGTATGGGATGAGAATACACGCCTTCCCTTCCATCGCTGCAGAGTGGACGTCTGGTCTCCTGTGTGGGATAATACACGCCCTCCTTTCAATCGCTGCAGACCTCAGAGTGGACGTCCGGTCTCCTGTGTGGGATAATACACGCCCTCCTTTCAATCGCTGCGGACCTCAGAGTGGATGTCCGGTCTCCTGTATGGGATGAGATACACTCCTTCCCTTCCACTGCTGCAGACCTCAGAGTGGACGTCCGGTCTCCTGTGTGGGATGAGATACACTCCTTCCCTTCCACTGCTGCAGACCTCAGAGTGGACGTCCGGTCTCCTTTGTGGGATGAGAATACACTCCTTCCCTTCCATCACTGCAGACCTCAGAGTGGACGTCCGGTCTCCTGTGCGGGACAAGAATACACTCCTTCCCTTCCATCACTGCAGACCTCAGAGTGGACGTCCAGTCTCCTGTGCGGGATGAGATACACTCCTTCCCTTCCATCGCTGCAGACCTCAGAGTGGACGTCCAGTCTCTCTGTGCGGGCCAAGTGTACACAGTTTTGTTCCGTCACAACTTCCACGACAGGCCAGTGTGAGGTTTTTGAGCTGGTGCTGACTGAAAACTGTCAGCTGCCCAAGGACCTGGGAGCTCTGCTCCCCACTCCTGGTGTGCGGTCTTGCGCCTGGCCTCCCTGCCTAGGTTACATGCAGTGGTCATCCCGGTCGCTCCCACACCCGTGTGGGCTCTGGGATCCCCTCTTCCAGCCAGCCCAGGGGACATCTGGCTGTCTCAGGACCCAGCCATCTGTAAAAATTAGGCAGGTCCCTTCAGTATGCTCCTGGTCAACAAAGAAAAACTTCAATTTTGAGAATGGCATCTGTATTCCGAAGTGTTCTCTCAGATGTTTGAGTTCCACTAAGTAG
Seq C2 exon
GGGAAGAAGATGCTGCATACAGGATGGAATATCCAGGGGAAGACGTCTAAGGAGAGATGCCCAGCTGGGAGTCCTATGCAAGGGGAAGAAGATGCTGCATACAGGATGGGATATCCAGGGGAAGATTTCTAAGAAGAGATGCCCAGCTGGGAGTCCTATGCAAGGGGAAGAAGATGCTGCATACAGGATGGGATATCCAGGGGAAGATTTCTAAGGAGAGACACCCGGCTGGAAGTCAAGATATGTCAGTTGTTTCCATTATAATAAAACCACTCATGTTAGATGAGCTGAACTTTCCCTTTTCCCCAGTTCTTACGATCAAAAAGTGGCTGTCCTAAATTTCATCACTCAATATCCTTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000231419_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATCCCCGATTCAGACCCA
R:
GCCGGGTGTCTCTCCTTAGAA
Band lengths:
347-1536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development