HsaINT0093495 @ hg38
Intron Retention
Gene
ENSG00000231419 | LINC00689
Description
long intergenic non-protein coding RNA 689 [Source:HGNC Symbol;Acc:HGNC:27217]
Coordinates
chr7:159008354-159017646:+
Coord C1 exon
chr7:159008354-159009438
Coord A exon
chr7:159009439-159016457
Coord C2 exon
chr7:159016458-159017646
Length
7019 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
GAGATCTCCCACCCTTTTAGGTC
3' ss Score
9.09
Exon sequences
Seq C1 exon
ATGAGATGTTAGTTGGTACAGGGAGGGGTTTCCAGGACCCGCACGCCCTTGCGGAGTGCCTGCTGGAGGGAGCCGGTGTGTCCAGGACACCCTTGCGGAGTGTCTGCTGGAGGGAGCCAGTGTGTCAGTGAGATGGCTATGCCCCTGGGCTGCTGTGTCCCAGGTTTCCTCAGTCTCTAACCCTTTGTTCTCACAGGGGATGGACTCTTGCTTCTTTTCCCAACTCCACCAAGAGGGACCGTCCCAGGACGTCCTTCCCCGGGCATCTGGCCCTACAGCTGCCTGAGGTCTCCATCACCGTTGGCGCCATCAGTCTGCTGTGCAGCCAGCTGTTGGTTTGGAGAGCCTGAAGAACTGCAGTTCACGTCTCATCTAAAGGAGCTGAAATGATATTGCAGCTTTTTCTTTTGGTTGCGTGCAGTGAGAATCTGGGAGCTGAACCTGTTATCTGCATGGTCTTCAGAAATCAGGCAAACTCGGAAAATGCCAACGCCAAAAATGCTGATGGGTGACAAAGTGTCACAGGTGTGATGCATTACAAATCTCAGGACTTTTGTTCACTGGATTTGAAAGGTCAAGCTTCACAGGAAAATGATGAAGTCCCAAAAGACCAGAAATATATTTCAGAAGATGCCAGTTACTACTTTAAATGTCAAACCAACATTTCAGAAATAACTTTCAATGATTATTTCCTGCCAAGAAGGTGAACGCTGGAGACCTTAATGGTGGAAGATGGAGGGCGTCTTTCCTTCTGTTAAGCTGACAACTTGGCTTCCATCTTGTGAGGACCTCACCCTACCTGGTGGCAGAGGACGTCTGACGCCCTCAATCATTGCCGTTACACTTCCCAGCCTGGTGGTCAGTCTCCTGGGGTCTGTGTGTTAACAAACCATCGACTGGACAATCGCAGTTTTCCTTATGAAGGCTTACTTTAAAAAGGCTCTGGATTTTCAGAAGCGAAGTCGCTTTCATCCCCGATTCAGACCCATCCTAGTGGAGGAAAAATCCTACCAGAAGAAGGGCTGACCATAGGAACTTGCCATTTCCTTGACCCCATCATATCTGAGGAAAAAACAACAGAAAAG
Seq A exon
GTAATTATATTATACCTGTATCCGTTTTCTTAAGCTGTAGGCTCACAATATCAAGGGCTCTGTGTGAAGACTTGGGTGGTTACAGAGGTGCCACCAAGTGGATGGGTCACATGAATTGGCAGTGGGGTTGAGATGACCCTGTTTTACGAAATCATGGACAGGATGAATTCTTGAGATGATCTGGGTCTTCCGTGTGATACGTGGATGCTTGGCCTTCTGGGCTAATGCAGCATTGCACCTGCCTCTGCCACCTAGTTTTGGCACCTCCAATGATGGAGAGCTCACTTCTTCTTGAGCAGCCCATTTATTTTTGTTCAGCTCTAATTGCAAGAAACAGCTTCTATTTTCCACACTGAAACCTCTCTCCCTGCGGTTTGTATCCACAGGTCCTAATTCTTCCTCTGGTTACAGGACAAGGACAATAATAATCTTTTCCTAGTAACAACTTTTCAACATACTTGAATAGTTAATATGGGCTGCTTCTCATTCTCTCTCCTGAAAACACAGGAAGATCTTTTCTTTCCTGTCGAAACTTCCCCAGTTCCGTGAATTATCCTTTGCGGGAGCGGGGTTCCTATCCCACACCATGGCGGATGCCCCCGCTTTGCGGGAGCGGGGTTCCTATCCCACACTGTTGCGGATGCCCCCCATTTGCGAGAGTGGGGTTCCTATCCCACACCATTGTGGATGCCCGCTGATGTGGTTGTTGCAAGCGTCCTCACAGCACGAAGCTAACATGTTTGGGACAGTGAGCCAGCCAGGTTCCCGGGAGGCCTCCTGCTTCCCTCGCCTGACTGCACTTACGCCTTCTCGGAGACTGACTTCTCCTTTGCTTCTTACCATGAGGCTGTCTTATCCACCAGCTCAGTGATTCCTGTCCTCCAAATTTACAACTGTGTTATCTGTACTCTACATGAAAACTTTAATTAACAAAGTCTTAGGTCACTTTTACATCCAAACTCTGATCAAATCTCGCTGCGCCCACTACCAATGCCACAGTTTCTCACTGGATTATTGGGGTTGCACCCGACTGCCTGCTTCAGCTCTTCCCCGTCCTCAGGACAGCACTGGGATGATGAGTGCCACGAGCCAGGTCACTTCACACCCCTGCCCTGCACCGCACAGTGGGGAGTGGAGGCTGTGGCCCTAGATGCCTGCACCCGCCTGCCACGCTTTTGGCCCCTTCCCCCTCCACTGGCCCCCAACCCCCAGCCCTGACGCCATGCCTGTAGTTGCGCCCCCAACACCCACGTCTCTTCCCTGGGTCCTCTTGTTTTCCTTGGCGCGTGACCGTGTCTCACACTCAATTATGTCTCTTACCACCCACTACAGAGAGTGGGACCGTTGTCTGGTTGGGTTCCTGTTGTTTCTCCCACACCCAGGACTGTGCCTAATGCACAGGAATAAAAAATATTAAATGAATAAGACAATCTGTGTGTCAGCAAAGATGACAAAAATACTGCTTATTTCTTGACTTGGTATTTAACTTTTCCCATATCTGCCCAACAAGACGGACTTCTGTGGCTGGAAAGCTTTCTCCCTGAACACTCAGCACTCCTGGCCCAGGTCCCACATGAAGGTCTAATAACCTAGTCCCACAAAAAGAGCAAAAGATGAGTGGAGGTTGTCAGTTTGACCGCAGCGAGAGGCAAATCAGGAAAGGGATGCATAAGCAGACCTCTGCCGAGCCCAGATGACTGGAATGTTCACAGTTGGTGGTTAGGAAAAGCTTCCTTGAGGAGAGGAGCGTTGGCTGAAATGCAGGGGAGGCGTAGGAGGGCATTCTGGGTGTGGAGGGCACTGTGTGGAAGAGGCAGAGAAGGGGTTACGTATTTAGGAGATAGAATTGCACACAGGCTGTGAAAGACGGGCATCAGCTCAGTCAAGACACAGGAGAAATCACAAGGTGGCCGCAGGGATGTAAAAGGTCACATCAAAGAGAGGTGGGACCCAAGAGTGTCTGTTGTTACAAATGCGTGTTTAGGAAGTGGACAGGGGTTTGCTGTGAGGCTTGCTTGGCAGCTCTGCAGGAGGAGGAGGAAGGAACGGCCTAGGCCTTTGGAATGTGCTTAGAGGCCCACAGCCAGGTCAGGGCGATCAATCCCAACAGGGCAGATGCAGAGGCTGCTGGTCAGTGCTGCTGGCTGGGCACAGAGGCGGGAAGAGCCAGGACCACAGAGCAGGGGAAGGAGATGAGGATTAACCCTGCATGGCCTGGGAGGAAAGTGGTCGACCACCCCCAGGGCAAGAACAATGCAGGAGAGGAGGCGCTCAGCACCCACAGTGCACCACCTTTGCCCACACAGCTCCTGAGCCAGGAGAAGACTCCTTAGTGGAGGAGAACACAATGTGAGTGACACAAAAGCTGTTAGAGACCGGGCAGATGCAGTGTCAGGAAGTCAAATGCAGAGTCTTCAAAGGAGGAAGCTGCCTGTGAAATGGTTTAGAACATGGCTCCTTTTTAAAATTGTCTTGTGTCCCCTATGAGATCTGGTATTCAGTCAAAGATAAGAGGCAGAGGATCTGTAATGCAGAAGGTTGTTCTTGAAGCTCTGTTTTGAAAGGATAGTGGCCAGAACGCGCTGCCTGTGTCCAGCGTCCCTGATTTGTCACAATGAGCAAGATCTCTGAGCATCGTCAATCTCTTTCTCTGCCCCAAGAAACTCAAGCTTGGTTAAAATAAGAAACATCTTCAAAAACATCTCTAGCTATCTCTTTTGTAATTCACTTTCTTTAGTATCATAATTAAGTTAAGATTTATATGTATGTGTTGGGAGCGCCTCTGGCTCTGGAAATTATGCCCATTGTTCATTACTATCAGCAAGCTGTGGTGTGTTTGCTTGCATGAAAAACATCACCATTGCTACTACTTAGAAAGGAGTCTAGTGCAAAATAAAGGGAAGTCTGCGTTTACAGTTTCTTAGGTAATGTGCTTCCATTACATTCGGTCTCATGTGGAAATTCAAATTGATCCATTAATGTGATTCTTGGGGCATATCCTCAATATGATATCGAAAAGATTTCTGATTAGCAGGTCACATAAGTTACATCTGACAAGTCTTGTCAGAACTCCGTCAGTACCAGTGACACACACTAGACCATACCACAGGCCACATTTTATCCCTGGAACACAGCTGTTACTCAGCAAAATGGTCAGATCTTAAAGTAAATATTAGCCTTATCCTCCACAAGTGATATTGTTAAGAGGTTTACTCTTGCAGTTTTATTGATGCTGCTTATTTTTTAAACAAACTTTTCTTTAACTCAAAGACAAACTTCAGCCAAGCCCGTCTATGTAGTACCCATTTCCAAATTAGTAGAGAATCAAAATTCACGAGGTTTATGTTCCACACAGTGAAGTTTAATGAGGAAGGGCCAAGTTCATCTGCAGCACGTCTGGATGAGCGCCCGGCCCCGCTGGGGCTCCAGGCACTGGCATTTCCTGTTGGCCCCAGCATCGGTCACAAGTGCAAGGTGGCAGCAGCCAGGGACTTCTTTAGAGAACATAGCCCCACGTAACTCCCTTTCACCATTGTTCTCCAAATTCTCCCATGCTTAAAACCACAGAGGGCTCATGGCAGAAGGCGAGGAATGGGCTCTTTCCTGCAGTTTCTGTGAGGCTGCTTCTGAAAGGCACTGGCTGGGTTTTAGCAAATCCTCATGATGGCAGGACCTGCCTAATCCCCAGGAGCATTTGGAGGATGCTGCCGTTGGGGGCCCCAGGCTCTGCTGGGAGGAGGGCAACGGCCTCACCCTTCCCCGGGTCAGGGACGAGGTCAGGGTCGGGGCTGGGGTCAGGGTCAGATTGGGATTGAGGTCGAGGTCGGGGTCGGGGTCAGGGTTGGGGTCACGGTTGAGGTCAGGTCGGGGTTGGGTCTGGGTCGGGTCGGGTTGGAGTCAGGGTTGAGGTTGAGGTTGGGTTGGGGTCAAGTTTGGGGTCAGGGTCAAGGTCAGGATTGGGTTGGGGTCAGGTTGGGGTCAGGGTTGAGGTTGAGGTCGGGTTGGGAGTCAAGGTTGGGGTCAGGGTCAAGGTTGGGATGGGGTCTGGGTTGGGTTGGGGTCAGGGTTGAGGTTGAGGTCGGGTTGGGGGTCAAGGTTGGGGTCAGGGTCAAGATGGGGATTGGGTCGGGTTGGGTCAGGGTCAGGGTTGAGGTTGGGTCGGGGGGTCAAGGTTGGGGTCAGGGTCAAGGTCGGGGTTGGGGTCGAGGTCGCATTGGGGTCAAAGGGGCTTGTGCACTTCTGTATCTTTGCATTTGCTTTTTATGTTCTGATTTGAAATGACTTAAAACGTATTATTTTGGCATTTTTCAAGCAACATTATGGTAAAATTTCTGGAGATGAGGTCTCCAGGCTCCCCTGGGCCATTAAATCATCTCGGCCTTGTCCCTCTTTTGGGTCTGCACAAGTCATGGGCATGGCAGGGCCCTTGGCTGGTGTCCAGGGCACTGGCCTCAGTGGGCAAACCTGGTGTGGGGGGAGGCGGACATGCAGTGGCCATAGGAGATGTTCTGTTCAGGCCCTGCCCAGGCACTGCAGACCTCGGACCTGTCCTGGGCCCTGGCACCACACACCCTCCTGCTCAGCACGGCCAGCTGCCTCCCCATGCCCTGCTCAGATGAATGCATGGGACTCCTTGGGAGACCGAGGTCAGAGTCACATCATATGTGGGAAGTATCTTGGGAAGGAGGAGCTGTGGAGGTGAGCAGCTGGGCCCTTCTGTGGCCCTGCAAGGCTGTAGAGGCCAGAGGGCATGGGCAGGTGCTGGCTTCGCCCGTGTGGGAGGCAGCCTTGGGGACGGGACTTCTCCCTGGCCTGTGTCCCCGGCGCCCCCTCCCATGCCAGCCATGACAGCCTCCATGCTTTCTCCCAGCCAAATCCTCCTAATGCTGGGCTCTGGAACGGCTGATCTGGTGGATTTTCAGGTGTTTATAATTTGTGAGTTATTGTGACCGTTTCTGGGGGTGAGGGCAGCTCCTTGCTAGTAAGCTGTCCTTTGTGGTCACGCCAACCTCAGGGAACCCTCCAAGGACGCTGTGTTCCTCAGGACACCCACAGTGAAGTGATGTCATGTGTGGACACAAAGGCGGCTGTGGGCCTGGAGAGCCCCTGTCGCACTTCTGCCGGGAGCTTTGCGCTTGGGGGTTTGTGTGAACGGAGGCTCGGGGTCAGAACTGATCATTTCTACACATCTATAAATCCATGAATGCCCCCACACTCTAGAACATAATTGACCGGGGCCAGGGTGGATCCAGAGATGAGACAGGTCTGGCCACCCAAACTGGGCCAGCTCCCTGTACGTGGGCTGTGGGAGGGTGAGCTGATTGAGTGTGGCCCAGAGTTGACAGCCTTGTCCCTCTCGTGTGCTCAGAGGGCTTCAGGCACCTGGAAAAAAGTGCACATGCCGTGCCATGCCTGCGGTGGGCCTGGCAGGCCCTTGGTGCACACGCTGTGCCACGACTGTGGTGGGCACGGCAGACTCTTGGCGGGGTCTGGGGTTTCCGCCAGATGCTGCTTCTTATTCTCAGGGGATGAGATAATTCTAGACAAGAGACTCTCCAGCTCTAAACAGAAATGTTTTCAACAGAGAGTCCTTTAAAAAAAAATCCTTTTGAAATATTGTTGATAAAAGCTGGCCATTCCTATTTTGAGACTTTACTGGCCAAAATGAAACAACAGGCAACCCTTTCAGACTTTTTATGTCTGTGAGACTCAGAAATCTGGCCACTAGTTGGCTGGCACTTCCTGGCAGGGGGCTGCTATGAAAGGGTCCCCAGCTCTGACCCAAGTATGAGCTGGGCCTGAGCAGGGCCTTCTTAAACGCTTTGTGCCTCGGTGACCAGCCATGCTCACGTGCGCATACACAGAATAGGTAGTATACACGGTCTGCAATGTCACTTTGCTTATTTTAGAGGAAGGAGATGACTGTTAGACCTTGTTTTCTATAGGAACAGGCAAAGGGGAGTTGACTGCGATGTTTAAATAGCACAGGTGGCCTGTGAGCCTCTGCACACCAGCCTTTCTGACTAGAAGCCCAGGGAGATGAGCTGACAGTGCTGTTCACAGGCGTTCCTGGGGAGAGTGCCAGGCCCAAGGGCAGTAGCTGGTGGGGGCAGAGCGGGGAACCTGGGCTCTGACGCAGGCACAGGCAGGGGTGTGGTCTTTAAAGAGCCCACAGGCTGCAGAAGGGGCCTCCTTGGTGATGAAACTTGACCTCCTGTGGAGGGAGGGCAGCCCTGGAATTTCTCTGACCTTTCTTTAGGCACCAAAGACTGTAAACAGTCTCTGCCCCGGGGCCTGACATGACCAGTCTCTGACCTCAGGGTTTATTTTATTAAAAATAATTCTTGAAAACTCTCCATTTCAACCGTTGCCCGAGCCACGTGTTGAGGATGACGGCATCGCGTTCTTTCTGCCCAGGGTGCGGAGGAGGGGCCGCCCCCGGGCGGTGGGAAGGGGGGCTGTCCCCAGACACCTCAAGGCCTGCGGAGTGTGGACGTTAAAGTTCACAGTCCCTCCAAGGATCAAGGGTTCATTTTGAGAGGGAGCAGGGACTCCCTTGTTAGAGGCCTGCAGTCCTCCAGCCCCCTGCAAAGAGTTCCTTCAAGGGGAAGCCAGCTCGCCTGTAAATGAACAACCTGATAAGCAAGAAGGTTACGGGCAGCCCAAGTCAGCAGCCAGGGGAGTGAGTCCAGAGATTTTTGTTTCTCTGTAGACTCTAAAGATCCCATCTTCACACATGTCCCCGAGCTGCCTTTCAGAAGCCCAGACCCCACTGCGGACCCCCACGAAGAGACCTTAGATGGGGGGAACGGGAGGCTGACCTCTGATCACTGTTCTTTGGGTCTAAATTTCTTCTTGAGGGGCTTGGAGGGAGCCACACCCCTGAGTCGGTTAACAATTTCTCTGCCGACCCCAATTTTTAAACAAAGCTGCTCTTCCTTAACCAACTACAAATCAGGAAATCCTTGAATCCTCTGATGACCCCTAAGTCCTCACTTCGAGATCTCCCACCCTTTTAG
Seq C2 exon
GTCAAAACCCACGTGTACGCCCAACGTCCTGATTGACGACTTTGCCTGCAGCTTCTGCTTTCCTGAAATTCGCTGCTGCCTTTAGAACCCTTGTCTGCAGCCAGTGGGGAGTTCAGGACTTAGGCGGAGCTGCCCCACCCTCCTGCTTGGCACCCTGCAAATACATGCCCTCCCTTCCATCGCTGCAGACCTCAGAGTGGGCGTCCGGTCTCCTGTGCGGGATGAGAATACACACCCTCCCTTCCATCGCTGCAGACCTTAGAGTGGATGTCCGGTCTCCTGTATGGGATGAGAATACACGCCTTCCCTTCCATCGCTGCAGAGTGGACGTCTGGTCTCCTGTGTGGGATAATACACGCCCTCCTTTCAATCGCTGCAGACCTCAGAGTGGACGTCCGGTCTCCTGTGTGGGATAATACACGCCCTCCTTTCAATCGCTGCGGACCTCAGAGTGGATGTCCGGTCTCCTGTATGGGATGAGATACACTCCTTCCCTTCCACTGCTGCAGACCTCAGAGTGGACGTCCGGTCTCCTGTGTGGGATGAGATACACTCCTTCCCTTCCACTGCTGCAGACCTCAGAGTGGACGTCCGGTCTCCTTTGTGGGATGAGAATACACTCCTTCCCTTCCATCACTGCAGACCTCAGAGTGGACGTCCGGTCTCCTGTGCGGGACAAGAATACACTCCTTCCCTTCCATCACTGCAGACCTCAGAGTGGACGTCCAGTCTCCTGTGCGGGATGAGATACACTCCTTCCCTTCCATCGCTGCAGACCTCAGAGTGGACGTCCAGTCTCTCTGTGCGGGCCAAGTGTACACAGTTTTGTTCCGTCACAACTTCCACGACAGGCCAGTGTGAGGTTTTTGAGCTGGTGCTGACTGAAAACTGTCAGCTGCCCAAGGACCTGGGAGCTCTGCTCCCCACTCCTGGTGTGCGGTCTTGCGCCTGGCCTCCCTGCCTAGGTTACATGCAGTGGTCATCCCGGTCGCTCCCACACCCGTGTGGGCTCTGGGATCCCCTCTTCCAGCCAGCCCAGGGGACATCTGGCTGTCTCAGGACCCAGCCATCTGTAAAAATTAGGCAGGTCCCTTCAGTATGCTCCTGGTCAACAAAGAAAAACTTCAATTTTGAGAATGGCATCTGTATTCCGAAGTGTTCTCTCAGATGTTTGAGTTCCACTAAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000231419:ENST00000447563:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains