HsaINT0093495 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:158801045-158810337:+
Coord C1 exon
chr7:158801045-158802129
Coord A exon
chr7:158802130-158809148
Coord C2 exon
chr7:158809149-158810337
Length
7019 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
GAGATCTCCCACCCTTTTAGGTC
3' ss Score
9.09
Exon sequences
Seq C1 exon
ATGAGATGTTAGTTGGTACAGGGAGGGGTTTCCAGGACCCGCACGCCCTTGCGGAGTGCCTGCTGGAGGGAGCCGGTGTGTCCAGGACACCCTTGCGGAGTGTCTGCTGGAGGGAGCCAGTGTGTCAGTGAGATGGCTATGCCCCTGGGCTGCTGTGTCCCAGGTTTCCTCAGTCTCTAACCCTTTGTTCTCACAGGGGATGGACTCTTGCTTCTTTTCCCAACTCCACCAAGAGGGACCGTCCCAGGACGTCCTTCCCCGGGCATCTGGCCCTACAGCTGCCTGAGGTCTCCATCACCGTTGGCGCCATCAGTCTGCTGTGCAGCCAGCTGTTGGTTTGGAGAGCCTGAAGAACTGCAGTTCACGTCTCATCTAAAGGAGCTGAAATGATATTGCAGCTTTTTCTTTTGGTTGCGTGCAGTGAGAATCTGGGAGCTGAACCTGTTATCTGCATGGTCTTCAGAAATCAGGCAAACTCGGAAAATGCCAACGCCAAAAATGCTGATGGGTGACAAAGTGTCACAGGTGTGATGCATTACAAATCTCAGGACTTTTGTTCACTGGATTTGAAAGGTCAAGCTTCACAGGAAAATGATGAAGTCCCAAAAGACCAGAAATATATTTCAGAAGATGCCAGTTACTACTTTAAATGTCAAACCAACATTTCAGAAATAACTTTCAATGATTATTTCCTGCCAAGAAGGTGAACGCTGGAGACCTTAATGGTGGAAGATGGAGGGCGTCTTTCCTTCTGTTAAGCTGACAACTTGGCTTCCATCTTGTGAGGACCTCACCCTACCTGGTGGCAGAGGACGTCTGACGCCCTCAATCATTGCCGTTACACTTCCCAGCCTGGTGGTCAGTCTCCTGGGGTCTGTGTGTTAACAAACCATCGACTGGACAATCGCAGTTTTCCTTATGAAGGCTTACTTTAAAAAGGCTCTGGATTTTCAGAAGCGAAGTCGCTTTCATCCCCGATTCAGACCCATCCTAGTGGAGGAAAAATCCTACCAGAAGAAGGGCTGACCATAGGAACTTGCCATTTCCTTGACCCCATCATATCTGAGGAAAAAACAACAGAAAAG
Seq A exon
GTAATTATATTATACCTGTATCCGTTTTCTTAAGCTGTAGGCTCACAATATCAAGGGCTCTGTGTGAAGACTTGGGTGGTTACAGAGGTGCCACCAAGTGGATGGGTCACATGAATTGGCAGTGGGGTTGAGATGACCCTGTTTTACGAAATCATGGACAGGATGAATTCTTGAGATGATCTGGGTCTTCCGTGTGATACGTGGATGCTTGGCCTTCTGGGCTAATGCAGCATTGCACCTGCCTCTGCCACCTAGTTTTGGCACCTCCAATGATGGAGAGCTCACTTCTTCTTGAGCAGCCCATTTATTTTTGTTCAGCTCTAATTGCAAGAAACAGCTTCTATTTTCCACACTGAAACCTCTCTCCCTGCGGTTTGTATCCACAGGTCCTAATTCTTCCTCTGGTTACAGGACAAGGACAATAATAATCTTTTCCTAGTAACAACTTTTCAACATACTTGAATAGTTAATATGGGCTGCTTCTCATTCTCTCTCCTGAAAACACAGGAAGATCTTTTCTTTCCTGTCGAAACTTCCCCAGTTCCGTGAATTATCCTTTGCGGGAGCGGGGTTCCTATCCCACACCATGGCGGATGCCCCCGCTTTGCGGGAGCGGGGTTCCTATCCCACACTGTTGCGGATGCCCCCCATTTGCGAGAGTGGGGTTCCTATCCCACACCATTGTGGATGCCCGCTGATGTGGTTGTTGCAAGCGTCCTCACAGCACGAAGCTAACATGTTTGGGACAGTGAGCCAGCCAGGTTCCCGGGAGGCCTCCTGCTTCCCTCGCCTGACTGCACTTACGCCTTCTCGGAGACTGACTTCTCCTTTGCTTCTTACCATGAGGCTGTCTTATCCACCAGCTCAGTGATTCCTGTCCTCCAAATTTACAACTGTGTTATCTGTACTCTACATGAAAACTTTAATTAACAAAGTCTTAGGTCACTTTTACATCCAAACTCTGATCAAATCTCGCTGCGCCCACTACCAATGCCACAGTTTCTCACTGGATTATTGGGGTTGCACCCGACTGCCTGCTTCAGCTCTTCCCCGTCCTCAGGACAGCACTGGGATGATGAGTGCCACGAGCCAGGTCACTTCACACCCCTGCCCTGCACCGCACAGTGGGGAGTGGAGGCTGTGGCCCTAGATGCCTGCACCCGCCTGCCACGCTTTTGGCCCCTTCCCCCTCCACTGGCCCCCAACCCCCAGCCCTGACGCCATGCCTGTAGTTGCGCCCCCAACACCCACGTCTCTTCCCTGGGTCCTCTTGTTTTCCTTGGCGCGTGACCGTGTCTCACACTCAATTATGTCTCTTACCACCCACTACAGAGAGTGGGACCGTTGTCTGGTTGGGTTCCTGTTGTTTCTCCCACACCCAGGACTGTGCCTAATGCACAGGAATAAAAAATATTAAATGAATAAGACAATCTGTGTGTCAGCAAAGATGACAAAAATACTGCTTATTTCTTGACTTGGTATTTAACTTTTCCCATATCTGCCCAACAAGACGGACTTCTGTGGCTGGAAAGCTTTCTCCCTGAACACTCAGCACTCCTGGCCCAGGTCCCACATGAAGGTCTAATAACCTAGTCCCACAAAAAGAGCAAAAGATGAGTGGAGGTTGTCAGTTTGACCGCAGCGAGAGGCAAATCAGGAAAGGGATGCATAAGCAGACCTCTGCCGAGCCCAGATGACTGGAATGTTCACAGTTGGTGGTTAGGAAAAGCTTCCTTGAGGAGAGGAGCGTTGGCTGAAATGCAGGGGAGGCGTAGGAGGGCATTCTGGGTGTGGAGGGCACTGTGTGGAAGAGGCAGAGAAGGGGTTACGTATTTAGGAGATAGAATTGCACACAGGCTGTGAAAGACGGGCATCAGCTCAGTCAAGACACAGGAGAAATCACAAGGTGGCCGCAGGGATGTAAAAGGTCACATCAAAGAGAGGTGGGACCCAAGAGTGTCTGTTGTTACAAATGCGTGTTTAGGAAGTGGACAGGGGTTTGCTGTGAGGCTTGCTTGGCAGCTCTGCAGGAGGAGGAGGAAGGAACGGCCTAGGCCTTTGGAATGTGCTTAGAGGCCCACAGCCAGGTCAGGGCGATCAATCCCAACAGGGCAGATGCAGAGGCTGCTGGTCAGTGCTGCTGGCTGGGCACAGAGGCGGGAAGAGCCAGGACCACAGAGCAGGGGAAGGAGATGAGGATTAACCCTGCATGGCCTGGGAGGAAAGTGGTCGACCACCCCCAGGGCAAGAACAATGCAGGAGAGGAGGCGCTCAGCACCCACAGTGCACCACCTTTGCCCACACAGCTCCTGAGCCAGGAGAAGACTCCTTAGTGGAGGAGAACACAATGTGAGTGACACAAAAGCTGTTAGAGACCGGGCAGATGCAGTGTCAGGAAGTCAAATGCAGAGTCTTCAAAGGAGGAAGCTGCCTGTGAAATGGTTTAGAACATGGCTCCTTTTTAAAATTGTCTTGTGTCCCCTATGAGATCTGGTATTCAGTCAAAGATAAGAGGCAGAGGATCTGTAATGCAGAAGGTTGTTCTTGAAGCTCTGTTTTGAAAGGATAGTGGCCAGAACGCGCTGCCTGTGTCCAGCGTCCCTGATTTGTCACAATGAGCAAGATCTCTGAGCATCGTCAATCTCTTTCTCTGCCCCAAGAAACTCAAGCTTGGTTAAAATAAGAAACATCTTCAAAAACATCTCTAGCTATCTCTTTTGTAATTCACTTTCTTTAGTATCATAATTAAGTTAAGATTTATATGTATGTGTTGGGAGCGCCTCTGGCTCTGGAAATTATGCCCATTGTTCATTACTATCAGCAAGCTGTGGTGTGTTTGCTTGCATGAAAAACATCACCATTGCTACTACTTAGAAAGGAGTCTAGTGCAAAATAAAGGGAAGTCTGCGTTTACAGTTTCTTAGGTAATGTGCTTCCATTACATTCGGTCTCATGTGGAAATTCAAATTGATCCATTAATGTGATTCTTGGGGCATATCCTCAATATGATATCGAAAAGATTTCTGATTAGCAGGTCACATAAGTTACATCTGACAAGTCTTGTCAGAACTCCGTCAGTACCAGTGACACACACTAGACCATACCACAGGCCACATTTTATCCCTGGAACACAGCTGTTACTCAGCAAAATGGTCAGATCTTAAAGTAAATATTAGCCTTATCCTCCACAAGTGATATTGTTAAGAGGTTTACTCTTGCAGTTTTATTGATGCTGCTTATTTTTTAAACAAACTTTTCTTTAACTCAAAGACAAACTTCAGCCAAGCCCGTCTATGTAGTACCCATTTCCAAATTAGTAGAGAATCAAAATTCACGAGGTTTATGTTCCACACAGTGAAGTTTAATGAGGAAGGGCCAAGTTCATCTGCAGCACGTCTGGATGAGCGCCCGGCCCCGCTGGGGCTCCAGGCACTGGCATTTCCTGTTGGCCCCAGCATCGGTCACAAGTGCAAGGTGGCAGCAGCCAGGGACTTCTTTAGAGAACATAGCCCCACGTAACTCCCTTTCACCATTGTTCTCCAAATTCTCCCATGCTTAAAACCACAGAGGGCTCATGGCAGAAGGCGAGGAATGGGCTCTTTCCTGCAGTTTCTGTGAGGCTGCTTCTGAAAGGCACTGGCTGGGTTTTAGCAAATCCTCATGATGGCAGGACCTGCCTAATCCCCAGGAGCATTTGGAGGATGCTGCCGTTGGGGGCCCCAGGCTCTGCTGGGAGGAGGGCAACGGCCTCACCCTTCCCCGGGTCAGGGACGAGGTCAGGGTCGGGGCTGGGGTCAGGGTCAGATTGGGATTGAGGTCGAGGTCGGGGTCGGGGTCAGGGTTGGGGTCACGGTTGAGGTCAGGTCGGGGTTGGGTCTGGGTCGGGTCGGGTTGGAGTCAGGGTTGAGGTTGAGGTTGGGTTGGGGTCAAGTTTGGGGTCAGGGTCAAGGTCAGGATTGGGTTGGGGTCAGGTTGGGGTCAGGGTTGAGGTTGAGGTCGGGTTGGGAGTCAAGGTTGGGGTCAGGGTCAAGGTTGGGATGGGGTCTGGGTTGGGTTGGGGTCAGGGTTGAGGTTGAGGTCGGGTTGGGGGTCAAGGTTGGGGTCAGGGTCAAGATGGGGATTGGGTCGGGTTGGGTCAGGGTCAGGGTTGAGGTTGGGTCGGGGGGTCAAGGTTGGGGTCAGGGTCAAGGTCGGGGTTGGGGTCGAGGTCGCATTGGGGTCAAAGGGGCTTGTGCACTTCTGTATCTTTGCATTTGCTTTTTATGTTCTGATTTGAAATGACTTAAAACGTATTATTTTGGCATTTTTCAAGCAACATTATGGTAAAATTTCTGGAGATGAGGTCTCCAGGCTCCCCTGGGCCATTAAATCATCTCGGCCTTGTCCCTCTTTTGGGTCTGCACAAGTCATGGGCATGGCAGGGCCCTTGGCTGGTGTCCAGGGCACTGGCCTCAGTGGGCAAACCTGGTGTGGGGGGAGGCGGACATGCAGTGGCCATAGGAGATGTTCTGTTCAGGCCCTGCCCAGGCACTGCAGACCTCGGACCTGTCCTGGGCCCTGGCACCACACACCCTCCTGCTCAGCACGGCCAGCTGCCTCCCCATGCCCTGCTCAGATGAATGCATGGGACTCCTTGGGAGACCGAGGTCAGAGTCACATCATATGTGGGAAGTATCTTGGGAAGGAGGAGCTGTGGAGGTGAGCAGCTGGGCCCTTCTGTGGCCCTGCAAGGCTGTAGAGGCCAGAGGGCATGGGCAGGTGCTGGCTTCGCCCGTGTGGGAGGCAGCCTTGGGGACGGGACTTCTCCCTGGCCTGTGTCCCCGGCGCCCCCTCCCATGCCAGCCATGACAGCCTCCATGCTTTCTCCCAGCCAAATCCTCCTAATGCTGGGCTCTGGAACGGCTGATCTGGTGGATTTTCAGGTGTTTATAATTTGTGAGTTATTGTGACCGTTTCTGGGGGTGAGGGCAGCTCCTTGCTAGTAAGCTGTCCTTTGTGGTCACGCCAACCTCAGGGAACCCTCCAAGGACGCTGTGTTCCTCAGGACACCCACAGTGAAGTGATGTCATGTGTGGACACAAAGGCGGCTGTGGGCCTGGAGAGCCCCTGTCGCACTTCTGCCGGGAGCTTTGCGCTTGGGGGTTTGTGTGAACGGAGGCTCGGGGTCAGAACTGATCATTTCTACACATCTATAAATCCATGAATGCCCCCACACTCTAGAACATAATTGACCGGGGCCAGGGTGGATCCAGAGATGAGACAGGTCTGGCCACCCAAACTGGGCCAGCTCCCTGTACGTGGGCTGTGGGAGGGTGAGCTGATTGAGTGTGGCCCAGAGTTGACAGCCTTGTCCCTCTCGTGTGCTCAGAGGGCTTCAGGCACCTGGAAAAAAGTGCACATGCCGTGCCATGCCTGCGGTGGGCCTGGCAGGCCCTTGGTGCACACGCTGTGCCACGACTGTGGTGGGCACGGCAGACTCTTGGCGGGGTCTGGGGTTTCCGCCAGATGCTGCTTCTTATTCTCAGGGGATGAGATAATTCTAGACAAGAGACTCTCCAGCTCTAAACAGAAATGTTTTCAACAGAGAGTCCTTTAAAAAAAAATCCTTTTGAAATATTGTTGATAAAAGCTGGCCATTCCTATTTTGAGACTTTACTGGCCAAAATGAAACAACAGGCAACCCTTTCAGACTTTTTATGTCTGTGAGACTCAGAAATCTGGCCACTAGTTGGCTGGCACTTCCTGGCAGGGGGCTGCTATGAAAGGGTCCCCAGCTCTGACCCAAGTATGAGCTGGGCCTGAGCAGGGCCTTCTTAAACGCTTTGTGCCTCGGTGACCAGCCATGCTCACGTGCGCATACACAGAATAGGTAGTATACACGGTCTGCAATGTCACTTTGCTTATTTTAGAGGAAGGAGATGACTGTTAGACCTTGTTTTCTATAGGAACAGGCAAAGGGGAGTTGACTGCGATGTTTAAATAGCACAGGTGGCCTGTGAGCCTCTGCACACCAGCCTTTCTGACTAGAAGCCCAGGGAGATGAGCTGACAGTGCTGTTCACAGGCGTTCCTGGGGAGAGTGCCAGGCCCAAGGGCAGTAGCTGGTGGGGGCAGAGCGGGGAACCTGGGCTCTGACGCAGGCACAGGCAGGGGTGTGGTCTTTAAAGAGCCCACAGGCTGCAGAAGGGGCCTCCTTGGTGATGAAACTTGACCTCCTGTGGAGGGAGGGCAGCCCTGGAATTTCTCTGACCTTTCTTTAGGCACCAAAGACTGTAAACAGTCTCTGCCCCGGGGCCTGACATGACCAGTCTCTGACCTCAGGGTTTATTTTATTAAAAATAATTCTTGAAAACTCTCCATTTCAACCGTTGCCCGAGCCACGTGTTGAGGATGACGGCATCGCGTTCTTTCTGCCCAGGGTGCGGAGGAGGGGCCGCCCCCGGGCGGTGGGAAGGGGGGCTGTCCCCAGACACCTCAAGGCCTGCGGAGTGTGGACGTTAAAGTTCACAGTCCCTCCAAGGATCAAGGGTTCATTTTGAGAGGGAGCAGGGACTCCCTTGTTAGAGGCCTGCAGTCCTCCAGCCCCCTGCAAAGAGTTCCTTCAAGGGGAAGCCAGCTCGCCTGTAAATGAACAACCTGATAAGCAAGAAGGTTACGGGCAGCCCAAGTCAGCAGCCAGGGGAGTGAGTCCAGAGATTTTTGTTTCTCTGTAGACTCTAAAGATCCCATCTTCACACATGTCCCCGAGCTGCCTTTCAGAAGCCCAGACCCCACTGCGGACCCCCACGAAGAGACCTTAGATGGGGGGAACGGGAGGCTGACCTCTGATCACTGTTCTTTGGGTCTAAATTTCTTCTTGAGGGGCTTGGAGGGAGCCACACCCCTGAGTCGGTTAACAATTTCTCTGCCGACCCCAATTTTTAAACAAAGCTGCTCTTCCTTAACCAACTACAAATCAGGAAATCCTTGAATCCTCTGATGACCCCTAAGTCCTCACTTCGAGATCTCCCACCCTTTTAG
Seq C2 exon
GTCAAAACCCACGTGTACGCCCAACGTCCTGATTGACGACTTTGCCTGCAGCTTCTGCTTTCCTGAAATTCGCTGCTGCCTTTAGAACCCTTGTCTGCAGCCAGTGGGGAGTTCAGGACTTAGGCGGAGCTGCCCCACCCTCCTGCTTGGCACCCTGCAAATACATGCCCTCCCTTCCATCGCTGCAGACCTCAGAGTGGGCGTCCGGTCTCCTGTGCGGGATGAGAATACACACCCTCCCTTCCATCGCTGCAGACCTTAGAGTGGATGTCCGGTCTCCTGTATGGGATGAGAATACACGCCTTCCCTTCCATCGCTGCAGAGTGGACGTCTGGTCTCCTGTGTGGGATAATACACGCCCTCCTTTCAATCGCTGCAGACCTCAGAGTGGACGTCCGGTCTCCTGTGTGGGATAATACACGCCCTCCTTTCAATCGCTGCGGACCTCAGAGTGGATGTCCGGTCTCCTGTATGGGATGAGATACACTCCTTCCCTTCCACTGCTGCAGACCTCAGAGTGGACGTCCGGTCTCCTGTGTGGGATGAGATACACTCCTTCCCTTCCACTGCTGCAGACCTCAGAGTGGACGTCCGGTCTCCTTTGTGGGATGAGAATACACTCCTTCCCTTCCATCACTGCAGACCTCAGAGTGGACGTCCGGTCTCCTGTGCGGGACAAGAATACACTCCTTCCCTTCCATCACTGCAGACCTCAGAGTGGACGTCCAGTCTCCTGTGCGGGATGAGATACACTCCTTCCCTTCCATCGCTGCAGACCTCAGAGTGGACGTCCAGTCTCTCTGTGCGGGCCAAGTGTACACAGTTTTGTTCCGTCACAACTTCCACGACAGGCCAGTGTGAGGTTTTTGAGCTGGTGCTGACTGAAAACTGTCAGCTGCCCAAGGACCTGGGAGCTCTGCTCCCCACTCCTGGTGTGCGGTCTTGCGCCTGGCCTCCCTGCCTAGGTTACATGCAGTGGTCATCCCGGTCGCTCCCACACCCGTGTGGGCTCTGGGATCCCCTCTTCCAGCCAGCCCAGGGGACATCTGGCTGTCTCAGGACCCAGCCATCTGTAAAAATTAGGCAGGTCCCTTCAGTATGCTCCTGGTCAACAAAGAAAAACTTCAATTTTGAGAATGGCATCTGTATTCCGAAGTGTTCTCTCAGATGTTTGAGTTCCACTAAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
-LOC154822:NR_024394:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)