HsaEX0000843 @ hg19
Exon Skipping
Gene
ENSG00000231419 | AC004863.6
Description
NA
Coordinates
chr7:158801045-158814488:+
Coord C1 exon
chr7:158801045-158802129
Coord A exon
chr7:158809149-158810337
Coord C2 exon
chr7:158814364-158814488
Length
1189 bp
Sequences
Splice sites
3' ss Seq
GAGATCTCCCACCCTTTTAGGTC
3' ss Score
9.09
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
AGGAAAATGATGAAGTCCCAAAAGACCAGAAATATATTTCAGAAGATGCCAGTTACTACTTTAAATGTCAAACCAACATTTCAGAAATAACTTTCAATGATTATTTCCTGCCAAGAAGGTGAACGCTGGAGACCTTAATGGTGGAAGATGGAGGGCGTCTTTCCTTCTGTTAAGCTGACAACTTGGCTTCCATCTTGTGAGGACCTCACCCTACCTGGTGGCAGAGGACGTCTGACGCCCTCAATCATTGCCGTTACACTTCCCAGCCTGGTGGTCAGTCTCCTGGGGTCTGTGTGTTAACAAACCATCGACTGGACAATCGCAGTTTTCCTTATGAAGGCTTACTTTAAAAAGGCTCTGGATTTTCAGAAGCGAAGTCGCTTTCATCCCCGATTCAGACCCATCCTAGTGGAGGAAAAATCCTACCAGAAGAAGGGCTGACCATAGGAACTTGCCATTTCCTTGACCCCATCATATCTGAGGAAAAAACAACAGAAAAG
Seq A exon
GTCAAAACCCACGTGTACGCCCAACGTCCTGATTGACGACTTTGCCTGCAGCTTCTGCTTTCCTGAAATTCGCTGCTGCCTTTAGAACCCTTGTCTGCAGCCAGTGGGGAGTTCAGGACTTAGGCGGAGCTGCCCCACCCTCCTGCTTGGCACCCTGCAAATACATGCCCTCCCTTCCATCGCTGCAGACCTCAGAGTGGGCGTCCGGTCTCCTGTGCGGGATGAGAATACACACCCTCCCTTCCATCGCTGCAGACCTTAGAGTGGATGTCCGGTCTCCTGTATGGGATGAGAATACACGCCTTCCCTTCCATCGCTGCAGAGTGGACGTCTGGTCTCCTGTGTGGGATAATACACGCCCTCCTTTCAATCGCTGCAGACCTCAGAGTGGACGTCCGGTCTCCTGTGTGGGATAATACACGCCCTCCTTTCAATCGCTGCGGACCTCAGAGTGGATGTCCGGTCTCCTGTATGGGATGAGATACACTCCTTCCCTTCCACTGCTGCAGACCTCAGAGTGGACGTCCGGTCTCCTGTGTGGGATGAGATACACTCCTTCCCTTCCACTGCTGCAGACCTCAGAGTGGACGTCCGGTCTCCTTTGTGGGATGAGAATACACTCCTTCCCTTCCATCACTGCAGACCTCAGAGTGGACGTCCGGTCTCCTGTGCGGGACAAGAATACACTCCTTCCCTTCCATCACTGCAGACCTCAGAGTGGACGTCCAGTCTCCTGTGCGGGATGAGATACACTCCTTCCCTTCCATCGCTGCAGACCTCAGAGTGGACGTCCAGTCTCTCTGTGCGGGCCAAGTGTACACAGTTTTGTTCCGTCACAACTTCCACGACAGGCCAGTGTGAGGTTTTTGAGCTGGTGCTGACTGAAAACTGTCAGCTGCCCAAGGACCTGGGAGCTCTGCTCCCCACTCCTGGTGTGCGGTCTTGCGCCTGGCCTCCCTGCCTAGGTTACATGCAGTGGTCATCCCGGTCGCTCCCACACCCGTGTGGGCTCTGGGATCCCCTCTTCCAGCCAGCCCAGGGGACATCTGGCTGTCTCAGGACCCAGCCATCTGTAAAAATTAGGCAGGTCCCTTCAGTATGCTCCTGGTCAACAAAGAAAAACTTCAATTTTGAGAATGGCATCTGTATTCCGAAGTGTTCTCTCAGATGTTTGAGTTCCACTAAGTAG
Seq C2 exon
AGTCTTCCTTTGTCAGCCAGGCTGGAGTGCAATGTGCAATGGCACAATCTTGGCTCACTGCAACCTCTGTCTCCTGGGCTCAAGCAATTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000231419_MULTIEX1-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGACGCCCTCAATCATTGC
R:
GAGACAGAGGTTGCAGTGAGC
Band lengths:
343-1532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)