HsaALTA1061024-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000256660 | CLEC12B
Description
C-type lectin domain family 12 member B [Source:HGNC Symbol;Acc:HGNC:31966]
Coordinates
chr12:10012785-10014741:+
Coord C1 exon
chr12:10012785-10012883
Coord A exon
NA
Coord C2 exon
chr12:10014531-10014741
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
CATGTCTTGGAGTTTTGCAGATA
3' ss Score
3.23
Exon sequences
Seq C1 exon
GGCATCCAGCTCCATCTCCCATTTGGCGTCATGCTGCTCTGGGTCTGGTAACTCTTTGCCTGATGTTGCTGATTGGGCTGGTGACATTGGGGATGATGT
Seq A exon
NA
Seq C2 exon
ATATCTAATGACATTAACTCAGATTCAGAGAAATTGAGTCAACTTCAGAAAACCATCCAACAGCAGCAGGATAACTTATCCCAGCAACTGGGCAACTCCAACAACTTGTCCATGGAGGAGGAATTTCTCAAGTCACAGATCTCCAGTGTACTGAAGAGGCAGGAACAAATGGCCATCAAACTGTGCCAAGAGCTAATCATTCATACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000256660-1-3,1-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=NA C2=0.215
Domain overlap (PFAM):
C1:
PF083915=Ly49=PU(23.0=82.4)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTGGGCTGGTGACATTGG
R:
CCTGCTGCTGTTGGATGGTTT
Band lengths:
100-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains