HsaALTA1061257-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000258376 | RP4-647C14.2
Description
NA
Coordinates
chr14:73245135-73245979:-
Coord C1 exon
chr14:73245524-73245979
Coord A exon
chr14:73245236-73245244
Coord C2 exon
chr14:73245135-73245235
Length
9 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TCTCATTCCTCCTCACATAGGGT
3' ss Score
8.17
Exon sequences
Seq C1 exon
CCCTTGCCTGCCCCATCGGAGCCGCCGGAGGTGGAGTCCGCCCCCCGGACCCCCGAACTCCTGTGCGTGCCCCTCCATGGTGCTCTAGGCTGTGGAGGGCAAGGCCAGTCCCCGGGAGCAGGGTGAGGAAGGGGCCCCCACGCAGCCCTGCTGTGGATTGGCGGGAGGACCCCAGGCTGGGCCAACCCAGCAGCCCGCGGCCAGGAGCGGGCATCCCAATGGGGAAATCGGCCAGGAGGGGCTGGGGAAGCTGGTGCCTTCGCCCGCGCCCCGTGAGCTTTACCTCCGTGCGACAAGAGCGGTGGCTCCGGGCGGGGCCCACGCAGCTGGAGCCTCCATCTCTCCTGCGGGACCAGAGCACCGGGAAGACCTGACCGAGACCCAACGTCCCTGCCCCCGTTCTGGGGCTCTCTGCAGGCCCCAACTTCTGCGGGACTCTCCAGTGGGAGCAGCAAG
Seq A exon
GGTTCTCAG
Seq C2 exon
GAACAACCCCTATACAAACCGGGACAGAGGCACCTCACTACTCCTTCTGTGCCCCACCTTCTCCACTGACCCTGCCGGAGTGCAGCACACACAGCAAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000258376-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTTCTGCGGGACTCTCCA
R:
GTGGGGCACAGAAGGAGTAGT
Band lengths:
92-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains