HsaINT1039624 @ hg38
Intron Retention
Gene
ENSG00000258376 | RP4-647C14.2
Description
NA
Coordinates
chr14:73242651-73245979:-
Coord C1 exon
chr14:73245524-73245979
Coord A exon
chr14:73245245-73245523
Coord C2 exon
chr14:73242651-73245244
Length
279 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TCTCATTCCTCCTCACATAGGGT
3' ss Score
8.17
Exon sequences
Seq C1 exon
CCCTTGCCTGCCCCATCGGAGCCGCCGGAGGTGGAGTCCGCCCCCCGGACCCCCGAACTCCTGTGCGTGCCCCTCCATGGTGCTCTAGGCTGTGGAGGGCAAGGCCAGTCCCCGGGAGCAGGGTGAGGAAGGGGCCCCCACGCAGCCCTGCTGTGGATTGGCGGGAGGACCCCAGGCTGGGCCAACCCAGCAGCCCGCGGCCAGGAGCGGGCATCCCAATGGGGAAATCGGCCAGGAGGGGCTGGGGAAGCTGGTGCCTTCGCCCGCGCCCCGTGAGCTTTACCTCCGTGCGACAAGAGCGGTGGCTCCGGGCGGGGCCCACGCAGCTGGAGCCTCCATCTCTCCTGCGGGACCAGAGCACCGGGAAGACCTGACCGAGACCCAACGTCCCTGCCCCCGTTCTGGGGCTCTCTGCAGGCCCCAACTTCTGCGGGACTCTCCAGTGGGAGCAGCAAG
Seq A exon
GTGAGAGGGTGTCCCCCGACCCCACCCCGTAAATCCCCCAGGTGGGAGTGAGCGACCCATGTTGGTACTCCAGAGAAGCGGGACTCAGAGCCCTACCCACCCTATAGTTTGGATTTAAGGCGGGACCACTCCACTGCATCTTAGGCAGATTCCCAGAGAAGACCCGAGGTGCATGAGATATAATACCCACCCGCTTGGCACAGCCATCCTGCGATCTAAGCAGGACATCAGTATAAGGCTCTTAGGATCATTCCTGGTCTCTCATTCCTCCTCACATAG
Seq C2 exon
GGTTCTCAGGAACAACCCCTATACAAACCGGGACAGAGGCACCTCACTACTCCTTCTGTGCCCCACCTTCTCCACTGACCCTGCCGGAGTGCAGCACACACAGCAAGCATTTAATAAATCGCTTGAAGTGGGGAACATCTGTACTCGGTAAAGAAACCACAGGAATTGGGAACTGCCGGTTGAAGATTATTTACCAGTTCCAGCAAAATTGACTGCACCTGCCATACTGCAGGCCGGTGCAGCATCAGGAGCTGGAGACCAGGGGCAACAGGCAGCACGCGTGCTCCAGCTCAGAGTGGAAGGCCCTGGGAAATGGTTTGATTTCCTGCGCTGAACTGATGCTGCTTCCAGAATGAATCTGCTCCTTGGTGGGTTCTGCTGATGTGGCCAGTGCTAGCCTAGGCCACGACCACCTAGCCCACCACCCAGAAGGCAGCATCCCCTGCTCCTGCTTTAACAAGCTGGCCCATTTTCATCTCTCCTACCTCTGGGAGTAGCAGGGGCGCTCCCGGAAGCTGACACCCCCTCCACAGGTCCGGCTGCAGGGGCTCCACTGGCTCCAGGGTCCCCAGGTGTCACTCTGCCGCCTCACCTTGGGAGCCTGCAGAAGACAGGACCATGCATCAGCATTGCCCACTCACAGCCTGAGCCCAGAGGCCCCTCCAAAGATGCTCTGCCTAAAACCCTCCCCTACCCATCAAGGAGTCTGGGATTCTCCCTTCCAGGGCCCACCTTTAGGACTCAGCAACACTGCCGGGCACCCCAAAACATATTCCTTTTCAGAATTAGCCTGCTTTCCTCATAAGGAGCTGAGAGCCAGGCCTGGAGGGCGGGAGCAGGAGCAGCTGGGAAGAGTTTGGAGTTTCAGGGGCCACTGGAGGGGAGGGACCCTACAGCCAGGGGCAGTTTGAGGGTCCAGGCATTTGTAGGTTAACCGTGATGTAGGGGAGGGGGGCCTAAAAGAAAATAAAGGGAAGCAACGTGGGGGGATCCTGCTAATCTGGCCGAGACTCCCAGGAGTACCCCAATATTCATCCCCTCCTTCTCCCATTGTGAGAGAATGCTTGAAAACTTGACTCAGCTGGGTACCTGGCTGCCCAAAATTTAAAAAAAAAATACATTTCCTGGACTGCCTGCAGCTAACTGTGGCTACATCACTTAGTTCTCATCAGTGAGATGTAAATACAAGTGTTGGGCAGCTGCCGCAAATAATCTCCTCAAGAGAGAGCCTGCGTGAGCCTTTGTCCTTTTCTCCTTCCTCCTGTACTCTTTCAGGCTGTCTGGGAAGCAGATGTGATGGCTGGAGTTGGAGCAGCCTTTTAGACTGTGAGGTAACTTGGAAATAGAGGCTTCAAACAGTGAAGCAAAGATAGAGGGACTCTAGAGCCTGGAGGATTTTGTGCAACAGAATAGCCCCAGACTTCTGACCCCTGGGTGTTTATATGAGAGAGGAATCATGTCTGTCTTATTGAAGAACTGTTATTTGGGACTCTACACAGGATTATAATCCTAGCAGGTACACTTTCCCACCAGAAAGATTGGACCCCTTGCAGCTGGCATCAGGAATCCACATGCCACACACACATTATCTCATTTCATCCTCACAACAACCCGACAGACCCCATTGCATGAATAAGAAAAGTGAGGCAGAGAGAGGAAACCACAGGGGAAGAAGTGGGCACAGTAGCCGGCCAGCCTCACTGCAGTCCTCTGCTCCCCTGCCGAGGCTGTGCCCCCACCCACCTGGGGGAATCAAATGAGACACTAGATGATTCCCTACAGGGTTGGACAGGGATTAGATGTAACTTCACAATTTTCCCAGGAGGCATATGGTGTACATGCAAACATTTGCTGGAAGGGGACTTTCTTTTAGGGTATCACCACTTAAGACTCAAGGAAAAATACCATTCCCACTTTTCAGAGAAAGAGCTCAATGGTCACACAGAAAAGCAGCCGGGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTGAGAGGCCAAGGCAGGCAGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTACCCAACATGGCGAAACCCCGTCTCTACTAAAACTACAAAAAATTAGCCAGGCGTGGCGGCGGGTGCCCGTAATCCCAGCTAGTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCCGAGATTGCATCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCATCTCAAAAAAAGAAAAGAAAAGCAGGCTCTTGCTTTCATGGTGACCCCTGAGCAGCTTCGCTGAATCTCAGGTGAGGAAGGACGTTTACTCATCTCTAACATCCCTGGTGCCAAACATCTAGTTATCCTTGTCTTATAACAAAACCCAGAACACTGAAGCAGAACAAACCACGCACAAACCACGCTAAGCCTGCCGAACCACACACAACCAAGAAGGAAGGGCTTGCCAGATGAGAGGTCTTAGCTTTCACTTTGTAAAATATCTACTCCTTCAAGTCTAACTTGGACAAAAATCTCTAAGCTTTCGAAACCACTGAGCCAAAATATCAAAGTTTTCTCTGAATGAAAGTTAAACTGAAATTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000258376:ENST00000554614:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTACCTCCGTGCGACAAG
R:
AAATGCTTGCTGTGTGTGCTG
Band lengths:
292-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains