HsaALTA1061542-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000259972 | AC009120.6
Description
NA
Coordinates
chr16:74305471-74332613:-
Coord C1 exon
chr16:74332567-74332613
Coord A exon
NA
Coord C2 exon
chr16:74305471-74305571
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TTGTTGATGAGGTTGTGCAGGGC
3' ss Score
-2.39
Exon sequences
Seq C1 exon
TGACGCACACAGGAGAGCCAGGATTCATGCTCTACATCCCCATAGAG
Seq A exon
NA
Seq C2 exon
GGCGACCACGGAACGGATCAGCGAGGCCAAGTACACTACCACCATCTGGTCATTGGTCTTCAGGTAAAAGGCCTTGACGAACTCCTGCAGGCTGACATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000259972-1-24,1-23-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAGCCAGGATTCATGCT
R:
CCTGAAGACCAATGACCAGATGG
Band lengths:
101-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains