HsaEX1001803 @ hg38
Exon Skipping
Gene
ENSG00000259972 | AC009120.6
Description
NA
Coordinates
chr16:74305127-74332613:-
Coord C1 exon
chr16:74332567-74332613
Coord A exon
chr16:74309999-74310134
Coord C2 exon
chr16:74305127-74305571
Length
136 bp
Sequences
Splice sites
3' ss Seq
CAGTCTTTTTGCACCCATAGCCT
3' ss Score
5.92
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TGACGCACACAGGAGAGCCAGGATTCATGCTCTACATCCCCATAGAG
Seq A exon
CCTCTTCAAGTTCCTTCAAAATTTTGCCTGGGTGGCTTCAGCTGAAAGCAGAAATGGCAGGAAGTAATTGGGGGAGATTCCCAAATCTATGCCCAACTGGGAATCAAATTTTTCTCTTGCCAAGAGATGAGCTGAG
Seq C2 exon
GGCGACCACGGAACGGATCAGCGAGGCCAAGTACACTACCACCATCTGGTCATTGGTCTTCAGGTAAAAGGCCTTGACGAACTCCTGCAGGCTGACATCTGGCAGCAGGTTGAAGACGTCCTGCAGCTGGTAGATGATCTGGTGGTTGATGGGCAGCTTGCCTGTGGCGACTTTTTCCAGGTAGCTCCTGATATCCAGAAGCTTGGAGTTCAGTCCCTTCAAACCATGGACCTGGTTTGTGATCCGCTGGGACAGAGTGCCCACCGTCGTGTCTTTGATATCTCTGTAATAACCCACAGTTAAAAAGGGCAGGAAAAGGCATCAGGGTACCATGTTATCAGGCAAGTTCTTACATTCTAAGAAAATTCCTAGCTTTGTTGGGTGAGGCAAGTTTTTAAAAGAAAAATGTCACTTCCCCATTTGATAAAGATTTCGTTATCAATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000259972_MULTIEX1-3/5=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAGCCAGGATTCATGCT
R:
AGGGACTGAACTCCAAGCTTCT
Band lengths:
255-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains