HsaALTA1061575-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000260220 | CCDC187
Description
coiled-coil domain containing 187 [Source:HGNC Symbol;Acc:HGNC:30942]
Coordinates
chr9:136256211-136256841:-
Coord C1 exon
chr9:136256705-136256841
Coord A exon
chr9:136256321-136256323
Coord C2 exon
chr9:136256211-136256320
Length
3 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
TTTCTGCAACGTCTCTCCAGCAG
3' ss Score
6.5
Exon sequences
Seq C1 exon
GAGACCCTCAGACCAAGCCCGGCCCTTCCTTAGCAGGGAAGCCCCGGGCTCCAACAGACAGCCATGTGGGGAGCTTCAGGGAACGCAGCCGACGCTCCTGCGGCAGAGAAGGTCCTTGTGGCCCACAAGAAGCCAGC
Seq A exon
CAG
Seq C2 exon
GTGGCTGAGGACAGCATGAGCGAAGAGGGCTTGGAATCGGGGCTGGATTTTGCTGAGAGCCCCGTGGAGGAGTCCCAGGAAACCGAGAGCTGGCGATCGGGGGAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000260220-39-40,39-39-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTGGGGAGCTTCAGGGAA
R:
CTTCGCTCATGCTGTCCTCAG
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains