MmuALTA1035593-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000048038 | Ccdc187
Description
coiled-coil domain containing 187 [Source:MGI Symbol;Acc:MGI:3045295]
Coordinates
chr2:26249333-26249942:-
Coord C1 exon
chr2:26249806-26249942
Coord A exon
chr2:26249441-26249443
Coord C2 exon
chr2:26249333-26249440
Length
3 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
CTCTTTCTATGTATATCCAGCAG
3' ss Score
5.92
Exon sequences
Seq C1 exon
GAGACCTACAGACCAAGTCCAGTGCAGCCTGGGCAGTGGAGAGGCCCTTGGCTACTACAGACAGCCATGTTTGGAGCTTGCATGGACAGTGTGGGCAGTCCTTAAGTGGAGATGGTCCTTGTTCCCAGGAAGCCAGA
Seq A exon
CAG
Seq C2 exon
GTGGCTGGAAAAAGAACAAGCCAAGGGCTGGATGTTTCCAGAAGCTCTGAGGAAGAACTGCAGGAAGAGGCACACTGGCAGTCAGAGCAGCGAAGGGGTGGAACGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048038-37-35,37-34-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.978 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGTCCTTGTTCCCAGGA
R:
GCCTCTTCCTGCAGTTCTTCC
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types